BAC Information

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BAC

Clone NameMSMg01-333K09
Chromosome14 (Build37)
Map Location 22,861,779 - 22,862,126
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneAp3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333K09.T7 (MSMg01no333_k09.b1)MSMg01-333K09.TJ (MSMg01no333_k09.g1)
ACCAG449344AG449345
length746736
length of high quality
(start - end)		378 (46 - 423)348 (76 - 423)
definitionCHROMAT_FILE: MSMg01no333_k09.b1 PHD_FILE: MSMg01no333_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:52 2005CHROMAT_FILE: MSMg01no333_k09.g1 PHD_FILE: MSMg01no333_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGTTCTTCTTCGATTTCTTCTTCTCCCCACTTACTGTTCACTA
GTATGTTGTCTGGTCTCCATGATCTTGTGTAGCTTCTGTAGTTTCCATTG
CTGTTGGTATTTATTATGTTATTTTCTTGTGGTCACATAGGAGGTAGATT
GTGATTTGCCTTTTTATATGTTTATTGAGTCACACTGTAGGTCCTAATAT
GGGGTCAATTTTGGAGAAAGTTCCATGGGCTGCTGCTAAGAATGTGCACT
CTCTAGTGTTTGGGTTTCAGTGTTCTGTAGATGTAGAGCCACCATGTGGG
TTCTGGGAGCTGAACCTGGGTCCTCAGCGAGCAAGAGCTGAAGGTGCTTT
GAAGCCATTTTTTCAGCCCCCCCCACCCGCCGCCGCTTTTTATTGTTTCT
GGCCTCCTTTGGTGAATTGTTCTGGATTTGTTTGTTTCCTATGACCTCTT
GGGTGTATCTAACCTCTTTACACTGAAGTGTACATTCCAGGATCGTCTGT
AGAGCTGGCCCTCCAACCTGTAGGTTTTTTTTTTTAATTAAATTTAACAG
GNAGTATTTATTTTATCTTCAATTTTAGATAGTTTTGTTGTGTGTTATGG
TCTGGTTTGACACTTTATTCTTTCAGAACTTAGACTGTATCTTTCCAGGC
CCTTAGGGAGCTAAACTTCTACTGAATAATCACGCATTACTTTGAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCATCTCATTTAAAAGCAAAGACA
CAGTCAATAGTGCCTTGGGGTAACTTAAGGACTGACCAGCATTCGAACAG
CATATTCGACCTGAGTTGACCCTGAGGAGTGAGACCACAGATGACTTCTT
TGAGACAACAGAGACTTGGGCTCTTAAAAGTTGTCCAGATGAACGAAATC
AAGAACATGACCAAAACATACCAGAGATGGAACCAGATAGGGTCCTGGCG
GTCCATAAAGAAGGAAGACAACAAATGTTACACAACCATACTCTAGACAG
ACTTCTAAAATCAGGAGTACCTCACTTCACTTTAGTGTACCTCACAGATA
TGCCAACTCCACATCACAGAAGCCCACCACCACCAGGTTTTCTACCAGCT
CAGATAACCCTTAGCATTTTTTTTAGCAGTAAAGTTTCTTTTTAGAAATT
AAATTAATTAGAGTGTCAGCTTTCTTAGACATGACGTTGTTACACACTTA
ACAAACTACAGTACAGTGTAAACATAACTTTTATATCCACTGGGAAATCA
AAAACTTTGTGTGACTCACTTTATTGCGACATTCACTTTATTGCAGCAGT
CTGGAACCCAACCTGCTATCTCTCTGAGGTACGCCAGCACTCACAGCACA
GCCTAGAATTTTATTGCCTCTTGTGGGAAGAAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_k09.g1 MSMg01no333_k09.g1 CHROMAT_FILE:
MSMg01no333_k09.g1 PHD_FILE: MSMg01no333_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:52 2005
         (348 letters)



>mm_chr14_22861579_22862326
          Length = 748

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatctcatttaaaagcaaagacacagtcaatagtgccttggggtaacttaaggactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agcatctcatttaaaagcaaagacacagtcaatagtgccttggggtaacttaaggactga 489

                                                                       
Query: 61  ccagcattcgaacagcatattcgacctgagttgaccctgaggagtgagaccacagatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccagcattcgaacagcatattcgacctgagttgaccctgaggagtgagaccacagatgac 429

                                                                       
Query: 121 ttctttgagacaacagagacttgggctcttaaaagttgtccagatgaacgaaatcaagaa 180
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttctttgaggcaacaaagacttgggctcttaaaagttgtccagatgaacgaaatcaagaa 369

                                                                       
Query: 181 catgaccaaaacataccagagatggaaccagatagggtcctggcggtccataaagaagga 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caggaccaaaacataccagagatggaaccagatagggtcctggcggtccataaagaagga 309

                                                                       
Query: 241 agacaacaaatgttacacaaccatactctagacagacttctaaaatcaggagtacctcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agacaacaaatgttacacaaccatactctagacagacttctaaaatcaggagtacctcac 249

                                                           
Query: 301 ttcactttagtgtacctcacagatatgccaactccacatcacagaagc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttcactttagtgtacctcacagatatgccaactccacatcacagaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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