Query= MSMg01no333_m13.b1 MSMg01no333_m13.b1 CHROMAT_FILE:
MSMg01no333_m13.b1 PHD_FILE: MSMg01no333_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:02 2005
(373 letters)
>mm_chr14_81376566_81377338
Length = 773
Score = 692 bits (358), Expect = 0.0
Identities = 367/370 (99%)
Strand = Plus / Plus
Query: 3 gaattcagcctcgtgtttccaagactggaactttgctgacagagacatctcgcagctcct 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcagcctcgtggttgcaagactggaactttgctgacagagacatctcgcagctcct 262
Query: 63 gttcacagaatacataatgacttggtcttttattcttgtgaacatatattctgaaaacaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttcacagaatacataatgacttggtcttttattcttgtgaacatatattctgaaaacaa 322
Query: 123 gtacatgtttccattaaagatacaaatagataaagtcaaattttacccttacacattttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtacatgtttccattaaagatacaaatagataaagtcaaattttacccttacacattttc 382
Query: 183 ccttcccagagttatttaggttttgtttgttttattttgttttgttttaattctcctgtg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccttcccagagttatttaggttttgtttgttttattttgttttgttttaattctcctgtg 442
Query: 243 cctaatgccaaacagacttcttgggaattcctacttttgtttgttattataaatatctta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctaatgccaaacagacttcttgggaattcctacttttgtttgttattataaatatctta 502
Query: 303 ctctatgccacatctgcttttattgttcttttgctgagtgagaactccttttcctttccc 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctctatgccaaatctgcttttattgttcttttgctgagtgagaactccttttcctttccc 562
Query: 363 aagaacattc 372
||||||||||
Sbjct: 563 aagaacattc 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_m13.g1 MSMg01no333_m13.g1 CHROMAT_FILE:
MSMg01no333_m13.g1 PHD_FILE: MSMg01no333_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:02 2005
(670 letters)
>mm_chr14_81584853_81585924
Length = 1072
Score = 1164 bits (602), Expect = 0.0
Identities = 654/672 (97%), Gaps = 2/672 (0%)
Strand = Plus / Minus
Query: 1 atagataatgcagacccttatctgctctatgtaagctcacgacatctgagatagttgtat 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 842 atagataatgcagacccttatctgctctatgtaagctcacaacatctgagatagttgtat 783
Query: 61 gtcttctatgaaatcttgtcatgaatagttaatagaatctgaaatattttctatttaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gtcttctatgaaatcttgtcatgaatagttaatagaatctgaaatattttctatttaaaa 723
Query: 121 tacattaaattgaagtcagaagacttataagcatgtttgtaatgacttaaccagattaag 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 722 tacattaaattgaagtcagaagacttctaagcatgtttgtaatgacttaaccagattaag 663
Query: 181 gaggcaaaaataatttaaacacatttcaatttattgatctcagagaaagccaagtcatga 240
| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 662 ggggcaaaaataattaaaacacatttcaatgtattgatctcagagaaagccaagtcatga 603
Query: 241 aaggttttgattcacaggtaaaattagttgctagttaacttgcttgctaccttctttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaggttttgattcacaggtaaaattagttgctagttaacttgcttgctaccttctttcta 543
Query: 301 ctgtgatgggaagactactcttttaaagtacaatcttcatagcaggcacaccccctttga 360
|||||||||||||||||||||||||||||| ||||||||||||||| | | | |||||
Sbjct: 542 ctgtgatgggaagactactcttttaaagtataatcttcatagcaggtatagtctttttga 483
Query: 361 ccttgccatgagtttctttagctttactgggtctagaaaagtctacagtgatttgtaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccttgccatgagtttctttagctttactgggtctagaaaagtctacagtgatttgtaatt 423
Query: 421 ggaacagtgagaa--tgtggatagaactaacaatcaagaaggataaaaacaaattgtgga 478
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggaacagtgagaacatgtggatagaactaacaatcaagaaggataaaaacaaattgtgga 363
Query: 479 atgttacaaggctttatcaccatggttgtagaagataacagggtgataatagtcaagaga 538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atgttacaaggctttatcatcatggttgtagaagataacagggtgataatagtcaagaga 303
Query: 539 agtccattcacctgctttagggaaacaagtaggtgtttatggcaaagacataggtagaga 598
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 302 agtccattcacctgctttagggaaacaagtaggtgtttatggcaaagacaaaggtagaga 243
Query: 599 cacaagagaaaaagcagacagaaaataatgagcttgcttttaatgtatatatatatatat 658
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cacaagaaaaaaagcagaaagaaaataatgagcttgcttttaatgtatatatatatatat 183
Query: 659 atatatatatat 670
||||||||||||
Sbjct: 182 atatatatatat 171
Score = 39.4 bits (20), Expect = 1e-06
Identities = 26/28 (92%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 644 tatatatatatatat-atatatatatat 670
|||||| |||||||| ||||||||||||
Sbjct: 138 tatatacatatatattatatatatatat 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 670
Length of database: 1072
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1062
Effective search space: 700920
Effective search space used: 700920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
