BAC Information

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BAC

Clone NameMSMg01-334L18
Chromosome14 (Build37)
Map Location 107,203,329 - 107,203,569
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334L18.T7 (MSMg01no334_l18.b1)MSMg01-334L18.TJ (MSMg01no334_l18.g1)
ACCAG450156AG450157
length783795
length of high quality
(start - end)
245 (74 - 318)174 (73 - 246)
definitionCHROMAT_FILE: MSMg01no334_l18.b1 PHD_FILE: MSMg01no334_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:15 2005CHROMAT_FILE: MSMg01no334_l18.g1 PHD_FILE: MSMg01no334_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCCTGAGCGGCGCGGA
ATTCTGACTCTTTCTAAAAGACAAATAGCATGATTACGTCTCTGAAGAGA
GGAAATCAGGGACCCAGTGCCCAAGTGGGAGTCTTGTATATCACAGCACA
ATTCTGAAGCAAGGCCATCTGATGCCCAGAGGGAGAGGGGTTGAGAGAGG
ATTGTGTCTCACCAGTGTAGTCCCTTTCCATGTGACAGATTCTAACACCT
GAGCGTTAATTAGCTGAGTGGGTAATGCAAATGATGGTTTTAGATTAACG
ATCATAACCTTGTATATTTGTTTTTAAAGATGTACTGTTGAAACAGAAAC
CACATAACTAAGTTCTAAAGAACTCAGCTTTGCTCAGGAGTCCCATGATC
TGAGAATGAATAGGCAGAGACCTTGGAGCCTGATGAGTACTTGCCTTTAA
GGAAGAGAGCTCACAGAGCTCTGACAGCTTTATCTTCGTGAAATCTCCAT
TCTACTTATCTCCGTGTCTAGTCTCATCCCTTCACTAATTGCATTTCTAT
TGTCCAAAGGCCCCCAGAGAATCTGACATAATTTTCCTACTCCCGCCCTT
ACTATTCTGCTATACTGCTTACCGTTTTGTTCCTTTTCCCGTTCTTCCCT
ATCTCCTTCTTTTCCTCCTTTCATTTTTTCCTGTTTCCTCCGCATTTTTA
CCCCTCTCTCTTTTTGTTCCCTCAATTTGTCTCTCCTTATTATTTTCTCT
CTTTTTTTCCCCATTTTCCTTCTCCCCCTCTTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTAGTTGTATAAATGGAGTTTTAGGGA
AAAAGCCCTGGAGTGAGGGCCTGTCTTAGTCAGGGTTTCTATTGCTGCAT
AAAACATCATGACCAAGAAGCAAGTTGGAGAGGAAAGGATTTATTCACCT
TACACTTCCACATTGCTGTTCATCAACAAAGGAAGTCAGGACTGGAACTC
ACACAGGTCAGGAACTTGGAGTAAAAAGCTGATGCAAAATACATGGAGGG
ATGCTGCTTACTGGATTTTTTTTGTGGCTTGCTCAGCTTGCTTTCTTATA
TAACCCATGATTACCATCCCATACCCGCCACCATCTACAATGCGTCCTCC
CTCCTTGATCTCTAATTGACACCATGTCTTACTGCTGCATCTCTTGGAGG
TATTTTCTCAAGTTAGGCTCCTTTCTCTGCGACATTTCCACCTTGCGCTC
CCTCGACCTACCTATCTCTCTCTCCTTCCCCAAAGTCTTGACTTGCCTTT
TTTCTCCCATTTCTCCCTACTATCCTCCCTTTCCCTTTCTACCCTCCTCC
CCCCCTTTCCTGTTTTTTTCCTCTCCTCCCCCTTTGAACTCCTTTCCCTT
TTCTTTTCCTTTTTTTTTTTTTCCCCTCCCCCCCTTTCATCTTTCCTTCT
ACTCCCTCCCCCTCTATATTTTCTTCCCCCTCCCCTCCCTTTCCTCCCCC
CTTTTCCCCCCTTTTCCTTCCCCATTTCCCCCCTCTTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_l18.b1 MSMg01no334_l18.b1 CHROMAT_FILE:
MSMg01no334_l18.b1 PHD_FILE: MSMg01no334_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:15 2005
         (245 letters)



>mm_chr14_107203129_107203773
          Length = 645

 Score =  373 bits (193), Expect = e-108
 Identities = 229/241 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagcatgattacgtctctgaagagaggaaatcagggacccagtgcccaagtgggagtc 60
           ||||||||| ||| ||||||||||||||||||| ||||||||||||   |||||||||||
Sbjct: 441 aatagcatggttaagtctctgaagagaggaaattagggacccagtggagaagtgggagtc 382

                                                                       
Query: 61  ttgtatatcacagcacaattctgaagcaaggccatctgatgcccagagggagaggggttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttgtatatcacagcacaattctgaagcaaggccatctgatgcccagagggagagggtttg 322

                                                                       
Query: 121 agagaggattgtgtctcaccagtgtagtccctttccatgtgacagattctaacacctgag 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaggattgtgtctcaccagtatagtccctttccatgtgacagattctaacacctgag 262

                                                                       
Query: 181 cgttaattagctgagtgggtaatgcaaatgatggttttagattaacgatcataaccttgt 240
           | || |||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 261 cattcattagctgagtgggtaatgcaaatgatggttttagattaatgatcatcaccttgt 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)