Query= MSMg01no336_d12.b1 MSMg01no336_d12.b1 CHROMAT_FILE:
MSMg01no336_d12.b1 PHD_FILE: MSMg01no336_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(547 letters)
>mm_chr14_102350231_102351176
Length = 946
Score = 1011 bits (523), Expect = 0.0
Identities = 538/543 (99%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 5 gaattctttccttctggcttagatgaatatgtaatgacttttccgtacattcagaatact 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccaagtggcttagatgaatatgtaatgacttttccgtacattcagaatact 264
Query: 65 gtttattcctggaaatcacgggagaggaactggaatcatgaccatattaagtaccataat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttattcctggaaatcacgggagaggaactggaatcatgaccatattaagtaccataat 324
Query: 125 gaagcacagggtagccgatgggccctggggccaacagctctgtactatcgattcacttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagcacagggtagccgatgggccctggggccaacagctctgtactatcgattcacttat 384
Query: 185 ttggtttccttgtaaaacgtctgtgacctgagccatggctgtggaatacaaatgcaggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggtttccttgtaaaacgtctgtgacctgagccatggctgtggaatacaaatgcaggtt 444
Query: 245 ctcaattcaggtcaagcaagaagagtctttcttaggcggatctgagtgttctctgggaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcaattcaggtcaagcaagaagagtctttcttaggcggatctgagtgttctctgggaat 504
Query: 305 ccaagaggagaccattcagtgtctcagaccgtgggaatcggtgttttctcttgactccca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaagaggagaccattcagtgtctcagaccgtgggaatcggtgttttctcttgactccca 564
Query: 365 attgagagcttctctatggacagagccatagcgttagtttgatcttgtgtctagaagctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attgagagcttctctatggacagagccatagcgttagtttgatcttgtgtctagaagctc 624
Query: 425 ctctgagagctcactatctgcctggcatgctgttgtatactaccatgatctaaggatgct 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctccgagagctcactatctgcctggcatgctgttgtatactaccatgatctaaggatgct 684
Query: 485 aagacaggattcttgtcattaaatagatgcacacagtctataatatctatatgatatatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 aagacaggattcttgtcattaaatagatgcacacagtctataatatctata-gatatatg 743
Query: 545 atg 547
|||
Sbjct: 744 atg 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_d12.g1 MSMg01no336_d12.g1 CHROMAT_FILE:
MSMg01no336_d12.g1 PHD_FILE: MSMg01no336_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(594 letters)
>mm_chr14_102568579_102569572
Length = 994
Score = 1133 bits (586), Expect = 0.0
Identities = 592/594 (99%)
Strand = Plus / Minus
Query: 1 actgtggaaaatatctccaaagtcaaacattctaagaggatgggtttcaatttcagcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 actgtggaaaatatctccaaagtcaaacattctaagaggatgggtttcaatttcagcaat 735
Query: 61 ctaaaaacctgcagactgaggaaaatgctttagccaggcccagttaatgatcagccaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ctaaaaacctgcagactgaggaaaatgctttagccaggcccagttaatgatcagccaatc 675
Query: 121 tactagggaaccattatgatctacttacctgatcctaatgtcctaatgatgcgctctatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tactagggaaccattatgatctacttacctgatcctaatgtcctaatgatgcgctctatc 615
Query: 181 cctgaagcagttacattttcattcctatataaactctaggctatgggaaatatcatataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cctgaagcagttacattttcattcctatataaactctaggctatgggaaatatcatataa 555
Query: 241 atgattataaatagactctgtcatcacatcccagtacaaactctgtgattttcttaaaga 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atgattagaaatagactctgtcatcacatcccagtacaaactctgtgattttcttaaaga 495
Query: 301 ataaaaaacattcaagggagagagtgggtattgcacagtattttaaatcggaatctttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ataaaaaacattcaagggagagagtgggtattgcacagtattttaaatcggaatctttaa 435
Query: 361 tgtactcttaaaatcacctaggaactaattaaaaacagagcaagagcgagaaatcaaatt 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtacttttaaaatcacctaggaactaattaaaaacagagcaagagcgagaaatcaaatt 375
Query: 421 cttgataattttatgtagggtcatattttcttcttttattcaagatacccattatttcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cttgataattttatgtagggtcatattttcttcttttattcaagatacccattatttcat 315
Query: 481 agtatgccaccttttcactcaatggtgtttaaaggaaagatgtattaaccttttgaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtatgccaccttttcactcaatggtgtttaaaggaaagatgtattaaccttttgaaaaa 255
Query: 541 aattaaagttttctctaagagtttaatcatgagttccaaatcacctacattcaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aattaaagttttctctaagagtttaatcatgagttccaaatcacctacattcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
