TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGTAATTCGATAAAGAGAGATGCTTGCATATCTGTATTTACTGTAGC
ACAGTCCGCACTAGAAATGTGTAATCAGCCACTATGACATCAATAAGTGA
AAGGACAAGTGGAAAGTAGTCTATTTTCCAAAGGAAGGATTTTTTCAGTT
ATAAAAAAAGAAGAATTTTACCATATCTTATAAAAAATAGGAGGAATTGG
AAATCTAAAATTTTCTAAAAAAATAATAATAAAATCTGTAACATGTAGTT
TATACAAGGAAAAATACAATTATATCTGAGAGAAGTAGTATGCATGTTCT
TTTTTTAGGAATTATGCAAACAAGACATATATCAAAAACAAAAGAATGGT
TACAGACATGGGAACTTATAAAATACAGAACTGAAGCAAGAATTCAGCAC
ATCTAAATATGGAAAACTGTTAAAATAAAGACAGAGGAAAAATAAAAATC
TTCTGTGAGGTAAAATGATACAATGAATTAGTTTTAAATTGGTGGCGATA
ATCAAATATTGACTCATACATAANAATAAATCCAAATTACAGACACAAAA
TGGTATGCCTTATTTAAATAAGAAGAATGGGGATTACATTGACCTGATGC
TCCTGGGCAGAGGCATCAATACAGAATTTTCTGTGAAACGCACGTCAAAT
ATGAAAAAGAGAGTTATCTTCTAAACTGTTCTCCCCTGGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAATGTCCTCTTGGTGAATTTTTACTTTGATGAG
TATGTAGTGTCCTTCCATATCCCTTCTAAAGAGTTTAAATTTTAAGTCTA
TTTTATCAGATATTAAAATGGCTACACCATTTTGCTGTTTATGTTCTTTT
GGTTATAATATTCTTTTCCCACCCTGTATCTTAAGATAATGGCCATACTT
GATATTGAGGTATGTTTTTTGGATGGAGCAGAAGAATGGATGCTGTTTTT
GCATCCATTTTATAAATCTTAAATTTTAACTTGGGGAATTGAGTCCATTG
ATACTGATAGATATCAATGAATGGTGTATTTGTGAGTGTGTGTATTCTCC
TTATATTTTCTGGTCTTGGGTTATTATTGTTTGTGTTTTTCTTGAGTATG
TTCAACCTTTTTAGGTTGGAGTTTTCCTTCTAGCACCTTTTATAAGCACC
TCTTTATTTTAGGATTTTTTTTATGATTTTACTGAAAATATTTTTGTGCC
TTTTACCCAAGTTTCTTCCTTTTTCTTTTATCACCAGTATTCTTAAATTT
TCTCTTTTAATACTATCCTTGATTTCCTGGATATTTTGTGTTAAAAGATT
TTTAGATTTAAGATTGTATTTGGCTGATATATCCACTTCTTCTATTATGT
CTTCCGCGCCCAAATACTCTCTTCCATCTCTTGGAG

Query= MSMg01no336_l15.b1 MSMg01no336_l15.b1 CHROMAT_FILE:
MSMg01no336_l15.b1 PHD_FILE: MSMg01no336_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:52 2005
         (541 letters)



>mm_chr14_40795223_40796163
          Length = 941

 Score =  938 bits (485), Expect = 0.0
 Identities = 526/544 (96%), Gaps = 10/544 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtaa----ttcgataaagagagatgcttgcatatctgtatttactgtagcac 60
           ||||||||||||    |   ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcaagtaaaaagt---atagagagagatgcttgcatatctgtatttactgtagcac 257

                                                                       
Query: 61  agtccgcactagaaatgtgtaatcagccactatgacatcaataagtgaaaggacaagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtccgcactagaaatgtgtaatcagccactatgacatcaataagtgaaaggacaagtgg 317

                                                                       
Query: 121 aaagtagtctattttccaaaggaaggatttttt--cagttataaaaaaa-gaagaatttt 177
           |||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||
Sbjct: 318 aaagtagtctattttccaaaggaaggattttttttcagttataaaaaaaagaagaatttt 377

                                                                       
Query: 178 accatatcttataaaaaataggaggaattggaaatctaaaattttctaaaaaaataataa 237
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 accatatcttataaagaataggaggaattggaaatctaaaattttctaaaaaaataataa 437

                                                                       
Query: 238 taaaatctgtaacatgtagtttatacaaggaaaaatacaattatatctgagagaagtagt 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 438 taaaatctgtaacatgtagtttatacaaggaaaaatacaattatatctgagagaggtagt 497

                                                                       
Query: 298 atgcatgttctttttttaggaattatgcaaacaagacatatatcaaaaacaaaagaatgg 357
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 498 atgcatgttctttttttaggaattatgcaaacaagacacatatcaaaaacaaaagaatgg 557

                                                                       
Query: 358 ttacagacatgggaacttataaaatacagaactgaagcaagaattcagcacatctaaata 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttacagacatgggaacttataaaatacagaactgaagcaagaattcagcacatctaaata 617

                                                                       
Query: 418 tggaaaactgttaaaataaagacagaggaaaaataaaaatcttctgtgaggtaaaatgat 477
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 618 aggaaaactgttaaaataaagacagaggaaaaataaaaaccttctgtgaggtaaaatgat 677

                                                                       
Query: 478 acaatgaattagttttaaattggtggcgataatcaaatattgactcatacataanaataa 537
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 678 acaatgaattagttttaaattggtggcgataatcaaatattgacacatacataaaaataa 737

               
Query: 538 atcc 541
           ||||
Sbjct: 738 atcc 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)