BAC Information

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BAC

Clone NameMSMg01-336M09
Chromosome14 (Build37)
Map Location 73,782,571 - 73,783,006
singlet/doubletsinglet
Overlap geneItm2b
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5
Downstream geneLOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336M09.T7 (MSMg01no336_m09.b1)MSMg01-336M09.TJ (MSMg01no336_m09.g1)
ACCAG451711AG451712
length777745
length of high quality
(start - end)
68 (43 - 110)441 (74 - 514)
definitionCHROMAT_FILE: MSMg01no336_m09.b1 PHD_FILE: MSMg01no336_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:56 2005CHROMAT_FILE: MSMg01no336_m09.g1 PHD_FILE: MSMg01no336_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATGTTGCCACAGTTTACACACACACCATGGAGGTGGGGGGGGGGTAG
GAAGAGGTATATTATCCTTTTACTGTTTGTTGTGAACAAGAGCTATAACG
CTATCTTTCCAACCTGGCAAAGATTTTAGTTACCCAAGTCCATCCCATGT
GTCACAGTTCAACCTATTTATACGAATTTTGTTCCCATTGGTTTGTTACT
TAAACGATGGACCTACTGCCTAGCTATGCATCACTGATGATGATTGCAAT
ACCAAGCTCTTTTTTTTTTATACCACCCACGACACGATTACTCCACAACA
AATCAATTTTTCCCTCTCTCCCTCCTTACACACACACCTTAATAAAACAG
ATAGACCATCATCCATACAACTTCTTCACCTCATAACACGCCCCTCATTA
CTCTTTCTCCGCATCTCCATCCTAATACGCCTACGTCCTATACACTACTC
TTTTTACTATCCTATTCTAACTCTCTTATATAACTCTCTCTCTATCAGTC
TTACCTCCAAATCCTGCCCTATCTACTTCTTTCCCCAACTTTTATTTTTT
AATAAACTCCACCACTACTTCCCTTTTTTCTCTTCCTACGCCCTATCCTC
CCCCCTTTATTTCCTTTCCTATTTTTCTACCTTTCTTAATTTCTATCATT
TCTTACCCGCCTCTGACCTACTTGCTGCCCCTCCTTTTTCTTTCCTTCAT
CTTTTTCCACCCCCCCCCCCCTCTCCN
ATGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTACAGATACCCATGGGGCACTCCTCA
AGCACAGGCTGTACAAACAGGTCCGTGGCTGCTGTGTAAAAGTGCTAAAG
GGCTTTCTTTCCAAGTTCTCAAACCAGCTTGGTCCTCTTGACCAGAGGAA
ATGCCCCAGGCAGAACACATTAAGGCTAATTCTGTTCCCAGCCCGGGCGG
TCGGACAAGGATGTTCCTTTGCCACACAGTGCAGCCCAAAGGAACATCAG
AACATTATGTAATCACTCCGCAGCTCTGGGATGAGATCAGTTCTCTCGCT
AGGCAAGCAGGCTTTTCCTTTATTCCACCTACTCCCATTGTAGAGATACT
GTCCCCACTGAGAAAAGGCTTCCAGCTTATAGCTGGAAAAAGAATTCATT
CTCTCTCTCCCTCTCTCTGTATTAACCAAACCAATTTAGCTGTGACTTCT
GTGTGGCTATAGAAGAACACAAGCCCTCACTGCTTAATTGAAGTATCTTC
CTTTGGATAGAGAAATCACGAAAAATTAAGAAATAAAAGCCAAGTGTACA
GCTATAGACAGNTACTGTGAAATAAAAATTAAATTATGGGGAGCATATGA
AAAAATCCTTTAAAACTCAACAAAAAAAATGTCTACTTTTTAAAGGGAAG
AATGAATTCCAAGTTCCCCCGTCAAAGGAAATTTTAATTTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_m09.g1 MSMg01no336_m09.g1 CHROMAT_FILE:
MSMg01no336_m09.g1 PHD_FILE: MSMg01no336_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:56 2005
         (441 letters)



>mm_chr14_73782371_73783206
          Length = 836

 Score =  810 bits (419), Expect = 0.0
 Identities = 434/441 (98%), Gaps = 5/441 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacagatacccatggggcactcctcaagcacaggctgtacaaacaggtccgtggctgct 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacagatacccacggggcactcctcaagcacaggctgtacaaacaggtccgtggctgct 260

                                                                       
Query: 61  gtgtaaaagtgctaaagggctttctttccaagttctcaaaccagcttggtcctcttgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtaaaagtgctaaagggctttctttccaagttctcaaaccagcttggtcctcttgacc 320

                                                                       
Query: 121 agaggaaatgccccaggcagaacacattaaggctaattctgttcccagcccgggcggtcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggaaatgccccaggcagaacacattaaggctaattctgttcccagcccgggcggtcg 380

                                                                       
Query: 181 gacaaggatgttcctttgccacacagtgcagcccaaaggaacatcagaacattatgtaat 240
           ||||||| || |    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaagg-tggt----tgccacacagtgcagcccaaaggaacatcagaacattatgtaat 435

                                                                       
Query: 241 cactccgcagctctgggatgagatcagttctctcgctaggcaagcaggcttttcctttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cactccgcagctctgggatgagatcagttctctcgctaggcaagcaggcttttcctttat 495

                                                                       
Query: 301 tccacctactcccattgtagagatactgtccccactgagaaaaggcttccagcttatagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tccacctactcccattgtagagatactgtccccactgagaaaaggcttccagcttatagc 555

                                                                       
Query: 361 tggaaaaagaattcattctctctctccctctctctgtattaaccaaaccaatttagctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tggaaaaagaattcattctctctctccctctctctgtattaaccaaaccaatttagctgt 615

                                
Query: 421 gacttctgtgtggctatagaa 441
           |||||||||||||||||||||
Sbjct: 616 gacttctgtgtggctatagaa 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 836
Length adjustment: 9
Effective length of query: 432
Effective length of database: 827
Effective search space:   357264
Effective search space used:   357264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)