Query= MSMg01no337_f04.b1 MSMg01no337_f04.b1 CHROMAT_FILE:
MSMg01no337_f04.b1 PHD_FILE: MSMg01no337_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:40 2005
(583 letters)
>mm_chr14_61674910_61675891
Length = 982
Score = 1031 bits (533), Expect = 0.0
Identities = 566/581 (97%), Gaps = 10/581 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagtcctttccaagagcaccaagggctagtctctccagctcctgttactcttat 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtcctttgcaagagcaccaagggctagtctctccagctcctgttactcttat 263
Query: 64 aaacattacttctgcactttcctctttttgtcctttaaaagcccctctactcatttgtta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 264 aaacattacttctgcactttcctctttttgtcctttaaaagcccctctactcacttgt-a 322
Query: 124 cg-gcttgcatagctgtttcactccatggattctgacgctgccctgtctccttcagactg 182
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 -gagcttgcatagctgtttcactccatggattctgacgctgccctgtctccttcagactg 381
Query: 183 tttctttcttgccttttagtgtgccttgtgattttaatccgtcaatcaatcaattgctga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttctttcttgccttttagtgtgccttgtgattttaatccgtcaatcaatcaattgctga 441
Query: 243 aagtcgatcacatgggtgaggtgccaggaagggtagcgattaggctttttaggcgtgttt 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 aagtcgatcacatgggtgaggtgccaggaaggggagcgattaggctttttaggcgtgttt 501
Query: 303 cgtgtattctatggcagccgtgcatgcgactcggtttccttgcaccctgctttgtttttt 362
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cgtgtgttctatggcagccgtgcatgcgactcggtttccttgcaccctgctttgtttttt 561
Query: 363 cttcctgctggaggtctggcaccccaggaactccttccgccgtcctgccgctttctcgtg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttcctgctggaggtctggcaccccaggaactccttccgccgtcctgccgcttt------ 615
Query: 423 taattcaccgctactttcctagcgcctttgatgtggtgggaggcttcctgtgtttaactg 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 -aattcaccgctactttcctagcgcctttgatgtggtgggaggcttcctgtgtttaactg 674
Query: 483 tgagagttcgggtgtcagcagcccacagccctgcactgtgaattccacaagcacttctga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 675 tgagagttcgggtgtcagcagcccacagccctgcactgtgaattccacaagcatttctga 734
Query: 543 gattttagggaaggctttacgtgagaccgggcatggcaaac 583
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gattttagggaaggctttacgtgagaccgggcatggcaaac 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space: 556956
Effective search space used: 556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_f04.g1 MSMg01no337_f04.g1 CHROMAT_FILE:
MSMg01no337_f04.g1 PHD_FILE: MSMg01no337_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:40 2005
(527 letters)
>mm_chr14_61840277_61841203
Length = 927
Score = 810 bits (419), Expect = 0.0
Identities = 428/431 (99%)
Strand = Plus / Minus
Query: 97 cattctgataggatgcgagcacaggcaggtacccagctcagccattctgataggatgcga 156
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cattctgataggatgcaagcacaggcaggtacccagctcagccattctgataggatgcga 668
Query: 157 gcacaggcaggtacccagcttggccattctgataggatgcgagcacaggcaggtacccag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gcacaggcaggtacccagcttggccattctgataggatgcgagcacaggcaggtacccag 608
Query: 217 ctcagccattctgataggatgcgagcacaggcaggtacccagcttggccattctaatagg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctcagccattctgataggatgcgagcacaggcaggtacccagcttggccattctaatagg 548
Query: 277 atgcaagcacaggcaggtacccagcttggccattctgataggatgcgagcacaggcaggt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atgcaagcacaggcaggtacccagcttggccattctgataggatgcgagcacaggcaggt 488
Query: 337 acccagttcggaacccagctcggaacccagctcggaacccagctggttttcgatgggagg 396
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 487 acccagttcggaacccagctcggaacccagctcagaacccagctggttttcgatgggagg 428
Query: 397 aaactacctttcttggaatatgctgggaatatgaatttcccttggtgctgttcattcctc 456
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 aaactacctttcttggaatatgctgggaatatgaatttcctttggtgctgttcattcctc 368
Query: 457 cttcctcactgctcactttctcccaaacagctggtgctggatgctgaaactgtgggtttg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cttcctcactgctcactttctcccaaacagctggtgctggatgctgaaactgtgggtttg 308
Query: 517 accaagttgaa 527
|||||||||||
Sbjct: 307 accaagttgaa 297
Score = 194 bits (100), Expect = 2e-53
Identities = 115/120 (95%)
Strand = Plus / Minus
Query: 13 cattctgataggatgcaagcacaggcaggtacccagctcagccattctgataggatgcga 72
|||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |
Sbjct: 601 cattctgataggatgcgagcacaggcaggtacccagcttggccattctaataggatgcaa 542
Query: 73 gcacaggcaggtacccagcttggccattctgataggatgcgagcacaggcaggtacccag 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcacaggcaggtacccagcttggccattctgataggatgcgagcacaggcaggtacccag 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 3
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
