BAC Information

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BAC

Clone NameMSMg01-338A01
Chromosome14 (Build37)
Map Location 97,310,823 - 97,311,358
singlet/doubletsinglet
Overlap geneLOC668654
Upstream geneKlhl1, LOC100043366
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338A01.T7 (MSMg01no338_a01.b1)MSMg01-338A01.TJ (MSMg01no338_a01.g1)
ACCAG452640AG452641
length1,324740
length of high quality
(start - end)
---540 (62 - 601)
definitionCHROMAT_FILE: MSMg01no338_a01.b1 PHD_FILE: MSMg01no338_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:33 2005CHROMAT_FILE: MSMg01no338_a01.g1 PHD_FILE: MSMg01no338_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGTCGCGCACATTTCCNCCCANCAACCCANACGCACCCTTNTAAAAA
TATATATCCTCAAGAATAAATAAATCTTTTTATAATAACTTATCCGCTCA
GTATATCACCGCTCTCATAATTTTACACTCCCCAACAAACACACGGNTNN
TNNTTGNNNNNGNNTGTTTTACACACAAGAACTACAATNTATTATTTTTT
TTCTCTGTAATTCGTAAAAATACAAATATATAATATATGTAAGAACTACT
TCACTAATTCTCCACATTTCCTCCTTATACATTCCATTATTCGATACTCC
CTATTACCACCTNTACACGTATACGATACAACGACACAGTNACATACGAT
CGATAACAACAGTATACTAATTCGCTACGATTAACTATATTCTTTCCCAG
ATACAAAAACTACAATACCTCATCTCTTATATCTTCCTTATATACAACAC
ATCATATATATCACACTACTATTCATCTATACATAACTATCTACCTACAT
ATCAACTAACACTATTATCCCTATCTTAAATATAACATCACTCCTCACTC
ACTCTCTTCTACTTCAAATATATCAACTAATATATCAACTTTTCTTCACA
TCACCATTTCACACTTATATNTATTATCTCCACCATCATTTAATCATCTC
CATATCTCCACTCTCATTCAATCTACTTTTCATCTATTATCACCCTCTAC
TATATCTCTCTCTATATATATCTTACATACCTAATTCTTTCATTCACCAT
CTATATACATATATTACTCTTCCTATACTATCTATCCCAACTTTTATAAT
AATACTATTAATATTACATACTACACTACACTACCCACCCTCTCTCACTA
TATATACAACACTCTCATATACATATATTATTCATATATTTATCACACTC
TATCTATCTCTCCTTCTCCTATCTACATTAAATTTATACAATTACAAACA
CATCATTTCATACTATATACCTATATAATTATAACTCCCTATTTTACCAC
TATATATTATACTCTACTATCNCTACACTCTCAACTATCTAATATGTCAT
ATATCATCCATCTACATAGACACACCCATAATCATATATTTATATTTCCT
CTCTTATTTCATATCCATTTACTCTATCTTATTATACACTCTATAAAATA
TTCACATCCTATAACACATTCTCCCTAATATTATCTTATTTCACTGTCTT
TCTCTAAATCTACTCTCTCATTTACTCTACTAACTTTCATCTCCATATCA
CTCAGATTATCTCTATATTATTCACTCTCTTCTCTTTCCCTAATATATTA
TTTCTATTATAATANTCCTCCTTA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCCATTCTAAGGAAAATGAATAGAAAATGATTTGTATT
TTTTTGTCTTAATAAGCATGCTTTTTCTACCTTGTTTTCTTATATTATGG
AAAAGTCATAGGACTTTTATACAGTTGAACTGTAGCATATATTTCCATCA
AGTTGCTTAGGTTGCATACTCTCTTGAGTCCTGTTGATTACAGCATCACT
TAGTCAGTGAGTGTCACTGTCTTCCACTAATACTGCTCTCAGAGTGACTC
TCTCGCTGAGTGTAAACGACTATTGCCATTTTGACCCTTGAGCTCAACTT
TCTTCATAGTCCTGATATTTCAGATACATTAGTGTGTACCTGTGAAATGT
CTTTCAAGGAGCATGAAATGGATGTGTTCTAAGGAAACTTAGTACAAGCA
GGAAAATATGCTATCAGAAAAATTGTAAAGTATTAGGAAGAAAAAGAGCA
GCAGAGTGGCAAATAAATGTTTTTACAAAAAAACATTGGATGAAGTAAAG
GGAAAATGGAATAGGAGAATCTGTGAATGATTTTAAGTTTGCATATAAGA
TATTATTTCAGGATGAAGAGTGGCTCAAGAGTTTAGAGTACACACCACTC
TTGCAGTTGACAAGGTAGATAGACCAGGGACATATTTTCAATTACCAACA
CCAATTTAGAGGGCTCAAAAGTGCCCATAACTCTACTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_a01.g1 MSMg01no338_a01.g1 CHROMAT_FILE:
MSMg01no338_a01.g1 PHD_FILE: MSMg01no338_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:33 2005
         (540 letters)



>mm_chr14_97310619_97311558
          Length = 940

 Score = 1036 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   attctaaggaaaatgaatagaaaatgatttgtatttttttgtcttaataagcatgctttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attctaaggaaaatgaatagaaaatgatttgtatttttttgtcttaataagcatgctttt 681

                                                                       
Query: 65  tctaccttgttttcttatattatggaaaagtcataggacttttatacagttgaactgtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctaccttgttttcttatattatggaaaagtcataggacttttatacagttgaactgtag 621

                                                                       
Query: 125 catatatttccatcaagttgcttaggttgcatactctcttgagtcctgttgattacagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catatatttccatcaagttgcttaggttgcatactctcttgagtcctgttgattacagca 561

                                                                       
Query: 185 tcacttagtcagtgagtgtcactgtcttccactaatactgctctcagagtgactctctcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcacttagtcagtgagtgtcactgtcttccactaatactgctctcagagtgactctctcg 501

                                                                       
Query: 245 ctgagtgtaaacgactattgccattttgacccttgagctcaactttcttcatagtcctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgagtgtaaacgactattgccattttgacccttgagctcaactttcttcatagtcctga 441

                                                                       
Query: 305 tatttcagatacattagtgtgtacctgtgaaatgtctttcaaggagcatgaaatggatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatttcagatacattagtgtgtacctgtgaaatgtctttcaaggagcatgaaatggatgt 381

                                                                       
Query: 365 gttctaaggaaacttagtacaagcaggaaaatatgctatcagaaaaattgtaaagtatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttctaaggaaacttagtacaagcaggaaaatatgctatcagaaaaattgtaaagtatta 321

                                                                       
Query: 425 ggaagaaaaagagcagcagagtggcaaataaatgtttttacaaaaaaacattggatgaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaagaaaaagagcagcagagtggcaaataaatgtttttacaaaaaaacattggatgaag 261

                                                                   
Query: 485 taaagggaaaatggaataggagaatctgtgaatgattttaagtttgcatataagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaagggaaaatggaataggagaatctgtgaatgattttaagtttgcatataagat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)