BAC Information

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BAC

Clone NameMSMg01-338H19
Chromosome14 (Build37)
Map Location 68,499,653 - 68,676,690
singlet/doubletdoublet
Overlap geneDock5
Upstream genePnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338H19.T7 (MSMg01no338_h19.b1)MSMg01-338H19.TJ (MSMg01no338_h19.g1)
ACCAG453003AG453004
length758742
length of high quality
(start - end)		555 (30 - 584)501 (72 - 572)
definitionCHROMAT_FILE: MSMg01no338_h19.b1 PHD_FILE: MSMg01no338_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:07 2005CHROMAT_FILE: MSMg01no338_h19.g1 PHD_FILE: MSMg01no338_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,499,653 - 68,500,192)(68,676,333 - 68,676,690)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
ATCAGCTTTTGCTCTCTCTTTCCAGGACTGTCAAGTTAACAGCCAACACT
ATCCATTACAGTATTTAATAAGTCAGCCACCTCTGTTGGATGATTTCATA
TTATCCTCTGTATGTAAAGCATTCAACAGAGCTGTATATGTCCTCCAATA
TGCTGACTGGTTGCCTAACACATACCACATCCTGTGTCAGATAAAAAAAA
ACATAGATGTAGCCTCTGTTCCTAGGAAACATGATAGTCTAGTGGGAGGA
AGAAAGATATTGAGTGTACTATCCAGATCCCAGAAATAACTCTTTAATTG
AACTTGGGACAACACTACCGAAGAATCCAGGCTAGCGAATACAATGAGAA
CCTCTGTAGGTCAGTCCCCTTGTCCATGAGACAACAGCCAACATGAAACT
CATTTAAGCTTATGGTCTTCAGGGAACAGGGGGGGTGGTCTCTTGGCTTC
CTTGACACGGTGCTCAGCAGTCACTTGAATGCATTTGAGTGACATCTACC
TCTAGTAACAGAGTGATATAGGTCACAATGCGGGGATGGTGCCTTTTCCC
AGCCCTCAATACCCTGGGGACAGAGTAAACCTAGCACCCCGCAATCCTGA
AGACCATGTTAAGTCCCCCGACCAGAAAGCAGCAGACTAAATCCCACTGA
AACACGGGTGACCAGCCCATAATTTTGCTTAGGTGCTTTAACCAAACTCC
CCACGAGT

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTAGTTAAGATGGTAACAAAAAGAGCA
GAGCATCTTTACCCCTGGAGGCCAGAGCTATACTCCAGACACCGTGGCCA
GGTCTGACAGCCTTGAGTCTGTTTCTGGAGCTACTGACTGATAAATGGTT
TACATGGGAGCTGGAGATGTTCGGTCAGTAGAGGCCTTGGGTAGTTTGTA
TGAAGCCCTGAGTTCAATCCCAGAGCCACTATGGCACATGGTGACTCAAG
CCCGACATCTCGGCTCTCAGGAGATGGAGGCAAGGAGATGTACAAGTTCA
AAGTCATCCTTAGCTACGTTGTGAATTTGAGGCTACCCTGGACTACATGA
GAGCCTGTCTCAAATTTGTTTGTTTTGAATGCCCACACAGCAAGCATCCT
GTACAGTCTGAGCAAAGGGAGCTGGAGGCTGTCTAGTGCATTCTCGAGTC
CGGAGAGATGCTTCTAAGGACTCCGTCTTTGAGACGGAGCAGGGTGGGAG
TTTTCAGAATAGGGATGCACCATCTTCAGAGTAACACTAGAACCATGAGG
CACCTCTGTGTCACCTGCTTAGATTCCAGTATGCTCTGTGTCTTCTGGTA
ACGTGCACACCCAATGGATTCCTAGTCCTGTCAGAACCAGCCTTAAAGAC
TGCTTTAGGTAGACAACTAAGTGCTTTTCTCCCCTGGGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_h19.b1 MSMg01no338_h19.b1 CHROMAT_FILE:
MSMg01no338_h19.b1 PHD_FILE: MSMg01no338_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:07 2005
         (555 letters)



>mm_chr14_68499438_68500392
          Length = 955

 Score = 1021 bits (528), Expect = 0.0
 Identities = 537/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcatcagcttttgctctctctttccaggactgtcaagttaacagccaacactatcc 75
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcatcagcttaggctctctctttccaggactgtcaagttaacagccaacactatcc 275

                                                                       
Query: 76  attacagtatttaataagtcagccacctctgttggatgatttcatattatcctctgtatg 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attacagtatttaataagtcagccacctctgttggatgatttcatattatcctctgtatg 335

                                                                       
Query: 136 taaagcattcaacagagctgtatatgtcctccaatatgctgactggttgcctaacacata 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taaagcattcaacagagctgtatatgtcctccaatatgctgactggttgcctaacacata 395

                                                                       
Query: 196 ccacatcctgtgtcagataaaaaaaaacatagatgtagcctctgttcctaggaaacatga 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccacatcctgtgtcagataaaaaaaaacatagatgtagcctctgttcctaggaaacatga 455

                                                                       
Query: 256 tagtctagtgggaggaagaaagatattgagtgtactatccagatcccagaaataactctt 315
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 456 tagtctagtgggaggaagaaagatattgagtgtacaatccagatcccagaaataactctt 515

                                                                       
Query: 316 taattgaacttgggacaacactaccgaagaatccaggctagcgaatacaatgagaacctc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taattgaacttgggacaacactaccgaagaatccaggctagcgaatacaatgagaacctc 575

                                                                       
Query: 376 tgtaggtcagtccccttgtccatgagacaacagccaacatgaaactcatttaagcttatg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgtaggtcagtccccttgtccatgagacaacagccaacatgaaactcatttaagcttatg 635

                                                                       
Query: 436 gtcttcagggaacagggggggtggtctcttggcttccttgacacggtgctcagcagtcac 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtcttcagggaacagggggggtggtctcttggcttccttgacacggtgctcagcagtcac 695

                                                                       
Query: 496 ttgaatgcatttgagtgacatctacctctagtaacagagtgatataggtcacaatgcggg 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ttgaatgcatttgagtgacatctacctctagtaacagagtgatataggtcacaatgcggg 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_h19.g1 MSMg01no338_h19.g1 CHROMAT_FILE:
MSMg01no338_h19.g1 PHD_FILE: MSMg01no338_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:08 2005
         (501 letters)



>mm_chr14_68675790_68676690
          Length = 901

 Score =  692 bits (358), Expect = 0.0
 Identities = 358/358 (100%)
 Strand = Plus / Minus

                                                                       
Query: 144 agatgttcggtcagtagaggccttgggtagtttgtatgaagccctgagttcaatcccaga 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agatgttcggtcagtagaggccttgggtagtttgtatgaagccctgagttcaatcccaga 842

                                                                       
Query: 204 gccactatggcacatggtgactcaagcccgacatctcggctctcaggagatggaggcaag 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gccactatggcacatggtgactcaagcccgacatctcggctctcaggagatggaggcaag 782

                                                                       
Query: 264 gagatgtacaagttcaaagtcatccttagctacgttgtgaatttgaggctaccctggact 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gagatgtacaagttcaaagtcatccttagctacgttgtgaatttgaggctaccctggact 722

                                                                       
Query: 324 acatgagagcctgtctcaaatttgtttgttttgaatgcccacacagcaagcatcctgtac 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acatgagagcctgtctcaaatttgtttgttttgaatgcccacacagcaagcatcctgtac 662

                                                                       
Query: 384 agtctgagcaaagggagctggaggctgtctagtgcattctcgagtccggagagatgcttc 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agtctgagcaaagggagctggaggctgtctagtgcattctcgagtccggagagatgcttc 602

                                                                     
Query: 444 taaggactccgtctttgagacggagcagggtgggagttttcagaatagggatgcacca 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taaggactccgtctttgagacggagcagggtgggagttttcagaatagggatgcacca 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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