BAC Information

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BAC

Clone NameMSMg01-338J23
Chromosome14 (Build37)
Map Location 100,398,857 - 100,575,308
singlet/doubletdoublet
Overlap geneKlf12
Upstream gene2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338J23.T7 (MSMg01no338_j23.b1)MSMg01-338J23.TJ (MSMg01no338_j23.g1)
ACCAG453106AG453107
length765727
length of high quality
(start - end)		543 (68 - 610)607 (75 - 681)
definitionCHROMAT_FILE: MSMg01no338_j23.b1 PHD_FILE: MSMg01no338_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:17 2005CHROMAT_FILE: MSMg01no338_j23.g1 PHD_FILE: MSMg01no338_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,398,857 - 100,399,399)(100,574,702 - 100,575,308)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGGAAT
TCTAGTCTGTGTTACGATCCCAGCTTGGTGTGCCTGGGTGTCAAGATGGA
GACCCATACTTGGCAGTGCCAATATTAATGCTCTTCAAAGACTACACTGA
CCAGTCCATCTTTGGATCACTTGTTCATGTTGGCTTCACTGTGTACCCAG
TTAAACTCAGAACATCTGTATGTGCCGTGAAGTGTGACCTTCATGCTGCT
TTTGGACAACTGAATTCCTCTGCTTGTTTTCCAAATAGGTGACTGACTAT
TCTTGTGCATCAGGTCATGATAAGAGAAAGACCCCAAAATAAATAAAGTG
TGGATCACAGTAATGGCAAGCTCCAAGATCAGAATCCTGGTCTCCTTACC
AGCATCCTATGCATCCCTGCCTCTTACTTGTTTTACTTTTGGCATTTCTA
CTCAGTTTCTGCCTCTACAGAGAAGGGGCTGTGTGTGAGCATGGAACCCC
ACAAGAAGACTTAAAAGTTCCATCAGTTTTTTTACATCCTCAGATGTGGC
TACTATCTAGATATAATATCCAATTGTATCCATTCCCTCCCCTGATTTCT
ATCTCTATACTTGACAACATAATACCTTCCATTAAGATTGTCTTAAAATA
ATCTCATATTGTCTGTAGAGTTCCCCATGGAAGGTCCTCCTTCCCGCTGA
CAGCCTGTGGGGTCCTGTGCGGGAAACTCACAATGTAAACCTTGTTTCCA
CATTTTCTAACCAGT

ATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAATTGATGCTCCCATTATGTGTTAGTT
TTATATGTTACCTACATGCAGGGAAACGTTTGAGATTCTATTTGAATCTC
TGGATCTTTAAGGATCTTGCCATAGGTCTGACAATAGAAGTTTGGGCTTG
CAGGCTCTACCTTTCTTTGTATATCAGAGTCTGAGGGCTGGAACAGGAAC
TTGGTACATTAATGGTCATGAGCTGTCCTGGGAACCTTTGAGATGTTACC
CCTGTTTCGCATACTCCTTTCTTTTCCCTTGAGGTCTGTGGAAACCTGCC
CAGTGCTGCCCATTCAGAATCAACAGGTTTGCTTCTGAATGCCATCGGTG
GCTGTCTCCACCTTTCCAGCTCCACTTGCTTCAGAAGGAATCTCACATAA
GTCATGTCTGTTTTAGAGTTTTGAGTGAGAACTGGCTGAGGAATGCAGGG
TTGTTGCCAGTGTAGTGAGTTAAGATAAGGCTATGCTGGAATATGGGCTT
GAAATCCAACATGGCTGTATTCTCACTGATTCACAGGGAAGATATCATGT
GATGAGGCAAAGGCTGGAGTGACGTGTTCACAAGTCGCAGAACACCATTG
ACAGCAAGAGCAGAAATGGAGAGAAAGGCGTGGGACAGATTTCCCATTGC
TTTAAGAGTGATTACAGCCCCTCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_j23.b1 MSMg01no338_j23.b1 CHROMAT_FILE:
MSMg01no338_j23.b1 PHD_FILE: MSMg01no338_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:17 2005
         (543 letters)



>mm_chr14_100398657_100399599
          Length = 943

 Score =  996 bits (515), Expect = 0.0
 Identities = 536/543 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccagcttggtgtgcctgggtgtcaagatggagacccatacttggcagtgccaatatta 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagcttggtgtgcctgggggtcaagatggagacccatacttggcagtgccaatatta 260

                                                                       
Query: 61  atgctcttcaaagactacactgaccagtccatctttggatcacttgttcatgttggcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctcttcaaagactacactgaccagtccatctttggatcacttgttcatgttggcttc 320

                                                                       
Query: 121 actgtgtacccagttaaactcagaacatctgtatgtgccgtgaagtgtgaccttcatgct 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 actgtgtacccagttaaactcagaacatctgtatgtgccatgaagtgtgaccttcatgct 380

                                                                       
Query: 181 gcttttggacaactgaattcctctgcttgttttccaaataggtgactgactattcttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttttggacaactgaattcctctgcttgttttccaaataggtgactgactattcttgtg 440

                                                                       
Query: 241 catcaggtcatgataagagaaagaccccaaaataaataaagtgtggatcacagtaatggc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcaggtcatgaaaagagaaagaccccaaaataaataaagtgtggatcacagtaatggc 500

                                                                       
Query: 301 aagctccaagatcagaatcctggtctccttaccagcatcctatgcatccctgcctcttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 aagctccaagatcagaatcctggtctccttaccagcatcctatgcatccctgcctctcac 560

                                                                       
Query: 361 ttgttttacttttggcatttctactcagtttctgcctctacagagaaggggctgtgtgtg 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttttactttcggcatttctactcagtttctgcctctacagagaaggggctgtgtgtg 620

                                                                       
Query: 421 agcatggaaccccacaagaagacttaaaagttccatcagtttttttacatcctcagatgt 480
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 agcatggaacccctcaagaagacttaaaagttgcatcagtttttttacatcctcagatgt 680

                                                                       
Query: 481 ggctactatctagatataatatccaattgtatccattccctcccctgatttctatctcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctactatctagatataatatccaattgtatccattccctcccctgatttctatctcta 740

              
Query: 541 tac 543
           |||
Sbjct: 741 tac 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_j23.g1 MSMg01no338_j23.g1 CHROMAT_FILE:
MSMg01no338_j23.g1 PHD_FILE: MSMg01no338_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:17 2005
         (607 letters)



>mm_chr14_100574502_100575508
          Length = 1007

 Score = 1158 bits (599), Expect = 0.0
 Identities = 605/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgatgctcccattatgtgttagttttatatgttacctacatgcagggaaacgtttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 attgatgctcccattatgtgttagttttatatgttacctacatgcagggaaacgtttgag 748

                                                                       
Query: 61  attctatttgaatctctggatctttaaggatcttgccataggtctgacaatagaagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 attctatttgaatctctggatctttaaggatcttgccataggtctgacaatagaagtttg 688

                                                                       
Query: 121 ggcttgcaggctctacctttctttgtatatcagagtctgagggctggaacaggaacttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggcttgcaggctctacctttctttgtatatcagagtctgagggctggaacaggaacttgg 628

                                                                       
Query: 181 tacattaatggtcatgagctgtcctgggaacctttgagatgttacccctgtttcgcatac 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 627 tacattaatggtcatgagctgtcctgggaacctttgagatgttagccctgtttcgcatac 568

                                                                       
Query: 241 tcctttcttttcccttgaggtctgtggaaacctgcccagtgctgcccattcagaatcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcctttcttttcccttgaggtctgtggaaacctgcccagtgctgcccattcagaatcaac 508

                                                                       
Query: 301 aggtttgcttctgaatgccatcggtggctgtctccacctttccagctccacttgcttcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggtttgcttctgaatgccatcggtggctgtctccacctttccagctccacttgcttcag 448

                                                                       
Query: 361 aaggaatctcacataagtcatgtctgttttagagttttgagtgagaactggctgaggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaggaatctcacataagtcatgtctgttttagagttttgagtgagaactggctgaggaat 388

                                                                       
Query: 421 gcagggttgttgccagtgtagtgagttaagataaggctatgctggaatatgggcttgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcagggttgttgccagtgtagtgagttaagataaggctatgctggaatatgggcttgaaa 328

                                                                       
Query: 481 tccaacatggctgtattctcactgattcacagggaagatatcatgtgatgaggcaaaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 tccaacatggctgtattctcactgattcacagggaagatatcatgtgatgaggcagaggc 268

                                                                       
Query: 541 tggagtgacgtgttcacaagtcgcagaacaccattgacagcaagagcagaaatggagaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tggagtgacgtgttcacaagtcgcagaacaccattgacagcaagagcagaaatggagaga 208

                  
Query: 601 aaggcgt 607
           |||||||
Sbjct: 207 aaggcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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