Query= MSMg01no338_p14.b1 MSMg01no338_p14.b1 CHROMAT_FILE:
MSMg01no338_p14.b1 PHD_FILE: MSMg01no338_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:43 2005
(249 letters)
>mm_chr14_69598936_69599584
Length = 649
Score = 426 bits (220), Expect = e-124
Identities = 243/252 (96%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 1 tttttataattcatattttacagaggaaaaagctaggctgtggacagccccggtagccag 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tttttataattcatattttacagaggacaaagctaggctgtggacagccccggtagccag 260
Query: 61 gtctccaactactgtccatctctctagggacctcagaaccccctgctgtgcttagctgct 120
|||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 261 gtctccaactactgtctatccctctagggacctcagaa-accctggtgtgcttagctgct 319
Query: 121 ttgcaacatgaagctgggtatcactgctgctctatgctgaaaggaaaagagcactggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgcaacatgaagctgggtatcactgctgctctatgctgaaaggaaaagagcactggaca 379
Query: 181 gcaccggctgcagaaagaaatcactagaagtatagcatgaaaattcataggcgggggggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcaccggctgcagaaagaaatcactagaagtatagcatgaaaattcataggcgggggggg 439
Query: 241 g---gggggtgg 249
| ||||||||
Sbjct: 440 gtgggggggtgg 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no338_p14.g1 MSMg01no338_p14.g1 CHROMAT_FILE:
MSMg01no338_p14.g1 PHD_FILE: MSMg01no338_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:43 2005
(619 letters)
>mm_chr14_69768339_69769359
Length = 1021
Score = 1141 bits (590), Expect = 0.0
Identities = 613/622 (98%), Gaps = 5/622 (0%)
Strand = Plus / Minus
Query: 3 aacttgacaggctttagaactgcataggagacagacccaggcatacctgtgaatgctata 62
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 721 aacttgacaggctttagaactgcataggaggcagacccaggcatacctgtgaatgctata 662
Query: 63 tagattgtggttagcctctgaaaaaa--tctgtgttcatcagtgtgggaagacccaaacc 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 661 tagattgtggttagcctctgaaaaaatctctgtgttcatcagtgtgggaagacccaaacc 602
Query: 121 tcatcccagcaacctgaagtcattgggaaaacatcttgaatcaatttccatccctctcct 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcatcccagcaacctgtagtcattgggaaaacatcttgaatcaatttccatccctctcct 542
Query: 181 ctcttcttcccttctttagaatcaaagcagaattcatttatggcaaacaaaggaaatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctcttcttcccttctttagaatcaaagcagaattcatttatggcaaacaaaggaaatata 482
Query: 241 taaacactcagcaagcaaaagcaatatataaatacacaagagttctatcccactacctat 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taaacacacagcaagcaaaagcaatatataaatacacaagagttctatcccactacctat 422
Query: 301 atctgataatatctgtctatagttttgatgttttttattaataaattttctttaaagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atctgataatatctgtctatagttttgatgttttttattaataaattttctttaaagaag 362
Query: 361 tattagttcatgattttaatttgccttttaatgctgtatgaaaaactacatgtcattatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 tattagttcatgattttaatttgccttttaatgctgtatgaaaaactacatgtcatcatg 302
Query: 421 ttcttttatgacactattttgagaaactacattaaatatcatgaaagaatattatataca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcttttatgacactattttgagaaactacattaaatatcatgaaagaatattatataca 242
Query: 481 tatatat--ttataattcttaaagatacatttt-atatggcatttgtttcttccaaattt 537
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 241 tatatatatttataattcttaaagatacatttttatatggcatttgtttcttccaaattt 182
Query: 538 tctctttcataaagaacagagacacttttctaccctataatacacaatttcttgctttta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctctttcataaagaacagagacacttttctaccctataatacacaatttcttgctttta 122
Query: 598 gatttatttcttggcacaggat 619
||||||||||||||||||||||
Sbjct: 121 gatttatttcttggcacaggat 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1021
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1011
Effective search space: 615699
Effective search space used: 615699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
