BAC Information

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BAC

Clone NameMSMg01-338P19
Chromosome14 (Build37)
Map Location 28,566,114 - 28,566,680
singlet/doubletsinglet
Overlap geneErc2
Upstream geneDnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338P19.T7 (MSMg01no338_p19.b1)MSMg01-338P19.TJ (MSMg01no338_p19.g1)
ACCAG453384AG453385
length752736
length of high quality
(start - end)
571 (41 - 611)567 (74 - 640)
definitionCHROMAT_FILE: MSMg01no338_p19.b1 PHD_FILE: MSMg01no338_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:44 2005CHROMAT_FILE: MSMg01no338_p19.g1 PHD_FILE: MSMg01no338_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATAAGTTGTCCGTCCTCGAATGAAACAAAATTTAAAATGGTGGTGGCAT
ACGGAGGCAGCTCAGGTAGAGTGTATGCGCCTAGCATGAATAATGCTCTG
CATTCAGTTCCCAGCACTACATAAACCAGGCATGGCTACTCAAGCATGTA
ATTCTAGCACTGGAGAGGTGGAGGCCGGAGGATCAGAAGTTCAAGGGCAT
CTTCAGCTACATAGCAAGTTCAAAACCAGCCTGGATTGTATGAGAACCTG
TCTCTTTTGAAAATTAAAAGTAGATATTTTTCATACACTATACTCTGATT
AGTTTTCCCTCCCCCAACTCCTCCTGGCTCCTTTCTACCTTGATTCCTAC
CCAAATCCATATCCTTTCTTTTTCTCTCTCACTAGAAAACAGTCATCTAA
AAAATGATAAAATGAAAAAAATGATAATATAAAAGCAAACATGAACAGGA
GAAAACAAACAGAAGAAAAAGAGCCAAATGAAAAGCACAAGAAACACATG
TGGTGCAAAGATGCAGAACTCCCATAAAGACACAAAATCAGAACATAATA
TGTAAGCAAAAGACCTGTAAGGTTAANAGAAAACTCCCAAACAAAGCATC
ATGACACCCTGCTCTGCCCCCAGTACCACTGAGTTCCTTTTGCTTTNGGC
ATCTACTGCACAGTAGAGCGCCTGGCCTTAAATGTGCTTTGTATACCCAG
GA
CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAGGAAAGGGGCAGACCTACATAGT
TCTATGACTGGATGAACATCTGAGCAAGCTAGGCCTGAAGCAGAAATAAA
ATGCTAATGTAATTTAGGTCATGGGTTGAAAAGAAGGAAGATGACTAGAA
AAGGCTCCGCAGTGAAGATGGAATTGGGTTGCATGTTTAAGGTCTCCTCA
TGCTTGAATGTACCCCTCCAGGATACTCCCATGTTCTTGTGGGGTGGGTC
TGTGCCCTGGCTGTCTTACCATATACCATGTCAGTCTTCCTTTCACTTTA
ATAGCTAATTTCCTATCTGCTAGATTCAGACCCTATGAAATCAGGCATCT
CACCTTAATATCTACCAGAGGCTGTGCACACCACAGGTAATAAAGGTGTG
TGTGGTATGTATGCACACTGAAACTGAGCTGAAACCATGAGAATAGCCCA
TACCCGGGTTAGAGAACAATATGATTTTAGAAGGAATTTTTGGAAGGGTC
TTTTTGGAGTCATAAAAATAAGGATGGAAAAAGAATGTGGTGTGGTTAGA
GAGATGGCTCAGTAGTTAAAAGCACCAACTGCTCTTCTGAAGGTCCTGAG
TTCAAATCCCAGCAACCACATGATGGCTTACAACCATCCATAATGAGATC
TGATGCCCTTTTCTAGGGTGTCTAAAGACAGCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_p19.g1 MSMg01no338_p19.g1 CHROMAT_FILE:
MSMg01no338_p19.g1 PHD_FILE: MSMg01no338_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:44 2005
         (567 letters)



>mm_chr14_28565961_28566927
          Length = 967

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataggaaaggggcagacctacatagttctatgactggatgaacatctgagcaagctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aataggaaaggggcagacctacatagttctatgactggatgaacatctgagcaagctagg 661

                                                                       
Query: 61  cctgaagcagaaataaaatgctaatgtaatttaggtcatgggttgaaaagaaggaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cctgaagcagaaataaaatgctaatgtaatttaggtcatgggttgaaaagaaggaagatg 601

                                                                       
Query: 121 actagaaaaggctccgcagtgaagatggaattgggttgcatgtttaaggtctcctcatgc 180
           |||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 600 actagaaaaggctctgcagtgaagatggaactgggttgcatgtttcaggtctcctcatgc 541

                                                                       
Query: 181 ttgaatgtacccctccaggatactcccatgttcttgtggggtgggtctgtgccctggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttgaatgtacccctccaggatactcccatgttcttgtggggtgggtctgtgccctggctg 481

                                                                       
Query: 241 tcttaccatataccatgtcagtcttcctttcactttaatagctaatttcctatctgctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcttaccatataccatgtcagtcttcctttcactttaatagctaatttcctatctgctag 421

                                                                       
Query: 301 attcagaccctatgaaatcaggcatctcaccttaatatctaccagaggctgtgcacacca 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 420 attcagaccctatgaaatcaggcatctcaccttaatatctaccagaagctgtgcacacca 361

                                                                       
Query: 361 caggtaataaaggtgtgtgtggtatgtatgcacactgaaactgagctgaaaccatgagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caggtaataaaggtgtgtgtggtatgtatgcacactgaaactgagctgaaaccatgagaa 301

                                                                       
Query: 421 tagcccatacccgggttagagaacaatatgattttagaaggaatttttggaagggtcttt 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 300 tagcccatacccgggttagagaacaatataattttagaaggaatttttggaagggtcttt 241

                                                                       
Query: 481 ttggagtcataaaaataaggatggaaaaagaatgtggtgtggttagagagatggctcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttggagtcataaaaataaggatggaaaaagaatgtggtgtggttagagagatggctcagt 181

                                      
Query: 541 agttaaaagcaccaactgctcttctga 567
           |||||||||||||||||||||||||||
Sbjct: 180 agttaaaagcaccaactgctcttctga 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)