BAC Information

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BAC

Clone NameMSMg01-339C01
Chromosome14 (Build37)
Map Location 22,038,290 - 22,038,838
singlet/doubletsinglet
Overlap geneAdk
Upstream geneLOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339C01.T7 (MSMg01no339_c01.b1)MSMg01-339C01.TJ (MSMg01no339_c01.g1)
ACCAG453491AG453492
length641746
length of high quality
(start - end)		98 (244 - 341)546 (80 - 625)
definitionCHROMAT_FILE: MSMg01no339_c01.b1 PHD_FILE: MSMg01no339_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:54 2005CHROMAT_FILE: MSMg01no339_c01.g1 PHD_FILE: MSMg01no339_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATTTTTTTTGTNTCTTCTTTTTTCTCTATTCTTTTTTCCATGTTNCG
NAAANNNAANTCTCCCCTAAATTNCCCTTTCCTCNCCCCCCTTTTTNTTC
TCTTTATTTTCCCTTTTTTTTTTTNNTTTTTTTTTTATTTTTTTTTTTTT
CCCTNATTNTTATNNNGGNNNNNNNTTTTNNNNNNNNNCCTCTATXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGNCGGATTCTTAA
AACGTTTTTCATCCCTCCTCCACGAGAGTGTGTAGATAGCAACGACAAGT
TTTAGGAATTGGTTCTGTTATGTTGGTTTGCAGTACTGATCTCAGAGTTA
GTAGGCTACATACTTACTTCCGATAAACCAACCAACCATTTAATTAAAAA
CCACTTTTTAAGCTTTTTTTTTTTTTTTTACCTTTTGGGGGAACAAAAAA
AAGGATTTTTTGGATAAATTTTCCAAATTCTAACCCCTTTTTTTTAAGAA
AAAAAAAAAACCTTTAAAAAACTTCTCGGGGGTTCTCTTGAACCTTTTTT
ACCCTTTTTTTGCCCCCGGGGGAAAAAACCCGTGGTGTTTCAAAAAATCT
CCCTCTTATAAAAAAAAAAACTTTTTTTTTTTTTTAAAAAA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCTGTAGACCAGGCTGGCC
TTGAACCCAGAAATCCACCTGCCTGTCTCCCAAGTGCTGGGATTAAAGGC
GTGCGCCACCACCGCCCGGCTGAACTTGTCTATTTCTATTGAAAAATATA
GTTTTTAAAATGTATGTGCATGTGTGCATCATAGGCATGCAGTACCTGTA
AAGGCCAGAGGAGGAAGAACAGTCAAGGCTAGTTGGTACTATAGGGAGGA
AAAGGATCCCACCCACCATGGACTCCATGAAGGCAGCAAACAGAGGAAAG
AAAACGGTTTATGGAGGAAGAATCCACAAGTTCTGGGGCTGAGTCTTTAA
GGTAGAGAAAGTCTGAGTGTAGCTTTAACGTCGGTTCTATGTGTGAGGTA
AAGATTCTGTAGAACGGAGGAGCAGGATGCTGTGAACATCCAGAGAATGG
TGAGATGGTTTCAAATGTATGGAACTATAAGGGTACTTATGCAGATACAA
CTGCAAGAGACCTGGAGAGTTTGTAGAGACAGACAAAAGTCAGAGGGAAC
AAAAGCAACCCACAGGGTAATAGTACATCTCANAGGTGGGGTCTGTAGAT
CAGGCAGACAACTTGTCAGGAGAATCCACCTGCAACTCAATGTGCACACT
ACTGAGATGGTGCCTACGTTTTGTCCATGGAAATGCATGGACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_c01.g1 MSMg01no339_c01.g1 CHROMAT_FILE:
MSMg01no339_c01.g1 PHD_FILE: MSMg01no339_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:54 2005
         (546 letters)



>mm_chr14_22037998_22038944
          Length = 947

 Score =  988 bits (511), Expect = 0.0
 Identities = 539/549 (98%), Gaps = 3/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgctgtagaccaggctggccttgaacccagaaatccacctgc--ctgtctcccaagtgc 58
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 841 acgctgtagaccaggctggccttgaacccagaaatccacctgcctctgtctcccaagtgc 782

                                                                       
Query: 59  tgggattaaaggcgtgcgccaccaccgcccggctgaacttgtctatttctattgaaaaat 118
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 781 tgggattaaaggtgtgcgccaccaccgcccggctgaacttgtctatttttattgaaaaat 722

                                                                       
Query: 119 atagtttttaaaatgtatgtgcatgtgtgcatcataggcatgcagtacctgtaaaggcca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atagtttttaaaatgtatgtgcatgtgtgcatcataggcatgcagtacctgtaaaggcca 662

                                                                       
Query: 179 gaggaggaagaacagtcaaggctagttggtactatagggaggaaaaggatcccacccacc 238
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 661 gaggaggaagaacagtcaaggctagttggtactatagggaggaaagggatcccacccacc 602

                                                                       
Query: 239 atggactccatgaaggcagcaaacagaggaaagaaaacggtttatggaggaagaatccac 298
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 601 atggactccatgaaggcagcaaacagaggaaagaaaatggtttatggaggaagaatccac 542

                                                                       
Query: 299 aagttctggggctgagtctttaaggtagagaaagtctgagtgtagctttaacgtcggttc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aagttctggggctgagtctttaaggtagagaaagtctgagtgtagctttaacgtcggttc 482

                                                                       
Query: 359 tatgtgtgaggtaaagattctgt-agaacggaggagcaggatgctgtgaacatccagaga 417
           ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 481 tatgtgtgaggtaaagattctgtaagaacagaagagcaggatgctgtgaacatccagaga 422

                                                                       
Query: 418 atggtgagatggtttcaaatgtatggaactataagggtacttatgcagatacaactgcaa 477
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 atggtgagatggtttcaaatgtatggaactataagggtacttatacagatacaactgcaa 362

                                                                       
Query: 478 gagacctggagagtttgtagagacagacaaaagtcagagggaacaaaagcaacccacagg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagacctggagagtttgtagagacagacaaaagtcagagggaacaaaagcaacccacagg 302

                    
Query: 538 gtaatagta 546
           |||||||||
Sbjct: 301 gtaatagta 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space:   502232
Effective search space used:   502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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