BAC Information

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BAC

Clone NameMSMg01-339J06
Chromosome14 (Build37)
Map Location 28,790,000 - 28,967,066
singlet/doubletdoublet
Overlap geneErc2
Upstream geneHesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339J06.T7 (MSMg01no339_j06.b1)MSMg01-339J06.TJ (MSMg01no339_j06.g1)
ACCAG453829AG453830
length754719
length of high quality
(start - end)		507 (52 - 558)368 (58 - 425)
definitionCHROMAT_FILE: MSMg01no339_j06.b1 PHD_FILE: MSMg01no339_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:26 2005CHROMAT_FILE: MSMg01no339_j06.g1 PHD_FILE: MSMg01no339_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,966,564 - 28,967,066)(28,790,000 - 28,790,325)
sequence
NNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCTCCACATTAAAGTGTTTGTAATTTGTTGTACAAATG
TTTACCTTAAAATAATGTTTATACTCAAGTATTTATGGATAAAATGATAT
AATGTCTGGTATTTACTTCAAAATAATCCAGGCAAGGGGTGGAGCTTGGC
AAAGAGGCAATTTCTGAAGTTAGACAGAGGACACATGGGACTTCTTTTTG
CTTTTATATATAATTGACATTAGGGGAAAGATTTTGTGGTAATTTCTTCA
AACCCAATTGGGCCACCAATAAGGAGAGAGATGCTTCTCACAGGAACACT
CCACTCCATTGCACAGAGGTATCTTTTACTTCTGACAGAAGAAAAAATCC
CAACTCATCAATACGAGGTTGGTGGCTATACCTTACATAGGGGCTAGGAA
TATACTGTGAAGGGCAGGGTTTTGTGATGCTTTACAATGTCTGGCTTAGT
AGAAACTGTTAAAGCTATCTCTTAGATATAAGCATTTGATAAGTTCGACT
TCCCATATAATCAGTTGATTTAACTGTAACAAAAAGGCCTTTCCAGCAAA
AGTCAGTACACAAGGGCGAGTTGTAAACTGTAAAGAAAATGTTGCTGCAG
AAAACAGTGGTGCAGTAACACCCCCACACTGAGTGGTTGTGAAAAATTCT
CCTTGTTGGATAAGGTCTAACCTCCCCACGCTCTTATTGGGTAACTCCAC
CACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGGCGAGAATCCTGCCCCTAACTTGTTTACAGTGAGGCTCA
TTGCATGATGGGTGATGCTGTGTATGCTTCCTGTTTTGTGGTGGACTCTT
CCTGTTTTGCTGTGGCATTCATTATGGGCATTCCTTTATGAACATTCCCC
ATTCCCTTGATAGCTACACTATCACCCTTGTTGTGGACTCACATGTATGG
GACCAAAGTATCACCACCATTTTTCCTAAAAAGCTTGGAGGAAACATGGT
GGTGCCTCCTCCCGTCCCTTTGTGTTGTGCATTTTGGTGAGTTTCTAGAT
GAGTTCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT
TTTGTTTTGTCTTGTTTTGTTTTTTGAGACNGGTTTTCTCTGTTTAGTTC
TGGCTGTTCTAGATTTCCTCTTTTATACCATTTTGCGCTTTTATTTTAAA
ATACGTCCGTCTCCTGCCCCCCACTCGTGGCATTTAACCTCTGTCTCTCA
TTTTTTTCACTCCTATACAAGTATTATCCTTTTATTTTTATATTTATTAA
AATTTATTACTTCCGCTAACCATTTTTCCTTTAATATCACCCTACCGCTC
TTTTCTTCCCTTTTATTCCCTTTCTTATAAAAAATTCCTTATCCCTTATC
CAACTTTCTCTATTATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_j06.b1 MSMg01no339_j06.b1 CHROMAT_FILE:
MSMg01no339_j06.b1 PHD_FILE: MSMg01no339_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:26 2005
         (507 letters)



>mm_chr14_28966219_28967125
          Length = 907

 Score =  973 bits (503), Expect = 0.0
 Identities = 503/503 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctccacattaaagtgtttgtaatttgttgtacaaatgtttaccttaaaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gaattctcctccacattaaagtgtttgtaatttgttgtacaaatgtttaccttaaaataa 789

                                                                       
Query: 65  tgtttatactcaagtatttatggataaaatgatataatgtctggtatttacttcaaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tgtttatactcaagtatttatggataaaatgatataatgtctggtatttacttcaaaata 729

                                                                       
Query: 125 atccaggcaaggggtggagcttggcaaagaggcaatttctgaagttagacagaggacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 atccaggcaaggggtggagcttggcaaagaggcaatttctgaagttagacagaggacaca 669

                                                                       
Query: 185 tgggacttctttttgcttttatatataattgacattaggggaaagattttgtggtaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgggacttctttttgcttttatatataattgacattaggggaaagattttgtggtaattt 609

                                                                       
Query: 245 cttcaaacccaattgggccaccaataaggagagagatgcttctcacaggaacactccact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttcaaacccaattgggccaccaataaggagagagatgcttctcacaggaacactccact 549

                                                                       
Query: 305 ccattgcacagaggtatcttttacttctgacagaagaaaaaatcccaactcatcaatacg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccattgcacagaggtatcttttacttctgacagaagaaaaaatcccaactcatcaatacg 489

                                                                       
Query: 365 aggttggtggctataccttacataggggctaggaatatactgtgaagggcagggttttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggttggtggctataccttacataggggctaggaatatactgtgaagggcagggttttgt 429

                                                                       
Query: 425 gatgctttacaatgtctggcttagtagaaactgttaaagctatctcttagatataagcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gatgctttacaatgtctggcttagtagaaactgttaaagctatctcttagatataagcat 369

                                  
Query: 485 ttgataagttcgacttcccatat 507
           |||||||||||||||||||||||
Sbjct: 368 ttgataagttcgacttcccatat 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_j06.g1 MSMg01no339_j06.g1 CHROMAT_FILE:
MSMg01no339_j06.g1 PHD_FILE: MSMg01no339_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:27 2005
         (368 letters)



>mm_chr14_28789800_28790567
          Length = 768

 Score =  584 bits (302), Expect = e-171
 Identities = 320/326 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggcgagaatcctgcccctaacttgtttacagtgaggctcattgcatgatgggtgatg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggcaagaatcctgcccctaacttgtttacagtgaggctcattgcatgatgggtgatg 260

                                                                       
Query: 61  ctgtgtatgcttcctgttttgtggtggactcttcctgttttgctgtggcattcattatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtatgcttcctgttttgtggtggactcttcctgttttgctgtggcattcattatgg 320

                                                                       
Query: 121 gcattcctttatgaacattccccattcccttgatagctacactatcacccttgttgtgga 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatcctttatgaacattccccattcccttgatagctacactatcacccttgttgtgga 380

                                                                       
Query: 181 ctcacatgtatgggaccaaagtatcaccaccatttttcctaaaaagcttggaggaaacat 240
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 381 ctcacatgtatgggaccaaagtatcaccaccagttttcctaaaaagcatggaggaaacat 440

                                                                       
Query: 241 ggtggtgcctcctcccgtccctttgtgttgtgcattttggtgagtttctagatgagttct 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggtgcctcctcccttccctttgtgttgtgcattttggtgagtttctagatgagttct 500

                                     
Query: 301 tgttttgttttgttttgttttgtttt 326
           ||||||||||||| ||||||||||||
Sbjct: 501 tgttttgttttgtcttgttttgtttt 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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