Query= MSMg01no339_n21.b1 MSMg01no339_n21.b1 CHROMAT_FILE:
MSMg01no339_n21.b1 PHD_FILE: MSMg01no339_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:48 2005
(571 letters)
>mm_chr14_113106170_113107139
Length = 970
Score = 1023 bits (529), Expect = 0.0
Identities = 556/567 (98%), Gaps = 5/567 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttggatccacaaagaattctaaacaactaaagcaatcattaaaagatataac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttggatccacaaagaattctaaacaactaaagcaatcattaaaagatataac 264
Query: 65 tgatttgaacgcattgaacagaatttttttttaaaaataagggtagcatttctttgtcat 124
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 265 tgatttgaacgcattgaacagaaattttttt-aaaaataagggtagcatttctttgtcat 323
Query: 125 ggaaactgaaaacagaatgaaaaattatagagctcaggaatgtatggctggctgatgact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaaactgaaaacagaatgaaaaattatagagctcaggaatgtatggctggctgatgact 383
Query: 185 tagcaacttccaagtacaaacaatgtgagggtgccttgacctgtagggataatcagttgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagcaacttccaagtacaaacaatgtgagggtgccttgacctgtagggataatcagttgg 443
Query: 245 gacctagggcaaaggagagagagtgggagggacaagaaacaccttgagggctggagagat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gacctagggcaaaggagagagagtgggagggacaagaaacaccttgagggctggagagat 503
Query: 305 ggcttagcggttaatagcacctactactcttctgaaggtcctgagttcaaatcccagaaa 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcttagcggttaatagcacctactgctcttctgaaggtcctgagttcaaatcccagaaa 563
Query: 365 ccacatggtggctcacaactacccatgacaagatctgacgccctcttctggagtgtctga 424
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 ccatatggtggctcacaactacccataacaagatctgacgccctcttctggagtgtctga 623
Query: 425 aaacagctacagtgtacttacatataataaataagtctttaaaaaagaaagaaagaaaga 484
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 aaacagctacagtgtacttacatataataaataagtctttaa----gaaagaaagaaaga 679
Query: 485 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 680 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaaaaga 739
Query: 545 aagaaagaaagaaagaaagaccttgaa 571
||||||||||||||||||| |||||||
Sbjct: 740 aagaaagaaagaaagaaaggccttgaa 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_n21.g1 MSMg01no339_n21.g1 CHROMAT_FILE:
MSMg01no339_n21.g1 PHD_FILE: MSMg01no339_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:48 2005
(482 letters)
>mm_chr14_113155582_113156465
Length = 884
Score = 862 bits (446), Expect = 0.0
Identities = 474/484 (97%), Gaps = 2/484 (0%)
Strand = Plus / Minus
Query: 1 ttatggttttccagtttcttttttcacttcacagctggtgacactgattgaattcccaga 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 684 ttatggttttccactttcttttttcacttcacagctggtgacacagattgaattcccaga 625
Query: 61 gtccagtgatagtagcaggagcagagatcaacagtttacagggaagtaaattaaaatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtccagtgatagtagcaggagcagagatcaacagtttacagggaagtaaattaaaatgta 565
Query: 121 tgaggaaattggctctgggttcctagcctttcaggatttcctattagctatcctcctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaggaaattggctctgggttcctagcctttcaggatttcctattagctatcctcctgtg 505
Query: 181 tgggggtccgaggctttgcctctctgctcctgttgtttgagacactatgaaaaacaattc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgggggtctgaggctttgcctctctgctcctgttgtttgagacactatgaaaaacaattc 445
Query: 241 atgatttcttgtaatttgacaacagccttcaaggttaatgtcaacttcatggtttatttt 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgatttcatgaaatttgacaacagccttcaaggttaatgtcaacttcatggtttatttt 385
Query: 301 atatcttatctgtggtatagctttctttgagtttttggtttacaattgcc--atatatat 358
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 atatcttctctgtggtatagctttctttgagtttttggtttacaattgccatatatatat 325
Query: 359 atcaattcataagaaaatctgagatatgttttagggtttaatttagccttcatatatgtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 atcaattcataagaaaatctgagatatgttttagggtttaatttagccttcatatatatt 265
Query: 419 ttagaaagcaactaagacaatactggtagaaaaaatggcttataagcagtggaataattt 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 ttagaaagcaactaagacaatactggtagaaaaaatggcttataagcaatggaataattt 205
Query: 479 cctg 482
||||
Sbjct: 204 cctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
