BAC Information

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BAC

Clone NameMSMg01-340A15
Chromosome14 (Build37)
Map Location 94,831,667 - 95,008,297
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340A15.T7 (MSMg01no340_a15.b1)MSMg01-340A15.TJ (MSMg01no340_a15.g1)
ACCAG454177AG454178
length721728
length of high quality
(start - end)		581 (45 - 625)557 (78 - 634)
definitionCHROMAT_FILE: MSMg01no340_a15.b1 PHD_FILE: MSMg01no340_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:00 2005CHROMAT_FILE: MSMg01no340_a15.g1 PHD_FILE: MSMg01no340_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,831,667 - 94,832,243)(95,007,741 - 95,008,297)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGACCTTCCACAACCCAATCAACTCTGTGAAGCCACTCTTCTGAAC
AGTACTACAGGGAGAAACATGCTTTTAATATGTGATCTTTTTGCCGAGAT
TCTTCATATCCAAATTGCAACAGCCTCACATTTCTACATCATAAACATAA
ACATTTCAGGGCAATGTCACCAGTCTACAAGCAGGCAATGGCTCTTCACT
CCTTTTCTGGACTGGTCTCAAGGTTTAGCTCAGTGCACTTGCATATGAAC
AGCTATCAGGATGGCATCCTTCAAACACTGGTGGTACTTCATGGAGAGAT
TTCTTGCTGTGCTTTTCTGAAATATTACCACATCTTTAGAGCATTCATGC
AATTTAGAATTCCACTCTCTACTTCTTGGTTATACTTGAGAGAAAAATAC
CATTAATGACAATTATCTTGGAATAAAAACCCTACACTTTAGCCCTTCTC
TGAATCCTCCCCAGTTTTGAGCTAAAAGGTATAAATGGGCTGTTGAATAT
TGTTATTGCATCTTTAGTCATGAAAGCTATGGAATTCTGTGTTGCTCTCC
TAGCTAGAAAATTGAGATATCAAGTAATCAGATGACTTTAATGTCTGGGC
TGTGTTCCTTCAGATTTTTAACAATCACTGATTTATCTTGCCAATTAAAC
AGTGACTGCACGCAGTGCTTT

NNGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGAGTTTATGTGCACAAGTT
TATACACTTGTGTGTATGTGCATATATATATTCTTAATTTTTTTTTTTTG
TTATTTTCCAAGTACCTCAGGTCTGGAAAAAAAAAACAATTGACCAGTGG
AGACAATTCAATCCACCAAGGTAGAAATAATTATAAAAGCTTGATGTATA
AAATTTATGTAAGCTAATTATGAAGATACATGAAAATATTTTAATAGAAT
AAATTGGTTAGTGCACTTAAAATATAGAAAAGTACTTTCTAGTGCACTGA
GGATAATTGTTTGCTAAAAACTCCACATTTATAAAAATGAATTGTTGACT
TTTTAAACATATTAAAAATTCTATTAGTTTTTGCTTCCCATTGTTTTTGA
TGTGTTACAATACAGGAGAAAATGTAAATACAAGCTAGTTATAGGAACTT
AACAAAGTCTCACGGAGTATTTTTTTTTAAATCCTGGAGTAGTTTATATT
ATTCACTATTATTTCAATGATTAAGGGCACACACTAGTACTGTGGTCTTT
ACTAAGGTTTAAAACAAAACATGCTCTCCCATGCAGTGCACCCTAAAAAT
ATCTGTACAGACATTTCAATAGAAGATTAAAATTGTGCACATTCTAGATT
TATTATTATATTGGGTACAAACATCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_a15.b1 MSMg01no340_a15.b1 CHROMAT_FILE:
MSMg01no340_a15.b1 PHD_FILE: MSMg01no340_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:00 2005
         (581 letters)



>mm_chr14_94831463_94832443
          Length = 981

 Score = 1116 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaccttccacaacccaatcaactctgtgaagccactcttctgaacagtactac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaccttccacaacccaatcaactctgtgaagccactcttctgaacagtactac 264

                                                                       
Query: 65  agggagaaacatgcttttaatatgtgatctttttgccgagattcttcatatccaaattgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggagaaacatgcttttaatatgtgatctttttgccgagattcttcatatccaaattgc 324

                                                                       
Query: 125 aacagcctcacatttctacatcataaacataaacatttcagggcaatgtcaccagtctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacagcctcacatttctacatcataaacataaacatttcagggcaatgtcaccagtctac 384

                                                                       
Query: 185 aagcaggcaatggctcttcactccttttctggactggtctcaaggtttagctcagtgcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagcaggcaatggctcttcactccttttctggactggtctcaaggtttagctcagtgcac 444

                                                                       
Query: 245 ttgcatatgaacagctatcaggatggcatccttcaaacactggtggtacttcatggagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgcatatgaacagctatcaggatggcatccttcaaacactggtggtacttcatggagag 504

                                                                       
Query: 305 atttcttgctgtgcttttctgaaatattaccacatctttagagcattcatgcaatttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atttcttgctgtgcttttctgaaatattaccacatctttagagcattcatgcaatttaga 564

                                                                       
Query: 365 attccactctctacttcttggttatacttgagagaaaaataccattaatgacaattatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attccactctctacttcttggttatacttgagagaaaaataccattaatgacaattatct 624

                                                                       
Query: 425 tggaataaaaaccctacactttagcccttctctgaatcctccccagttttgagctaaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggaataaaaaccctacactttagcccttctctgaatcctccccagttttgagctaaaag 684

                                                                       
Query: 485 gtataaatgggctgttgaatattgttattgcatctttagtcatgaaagctatggaattct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtataaatgggctgttgaatattgttattgcatctttagtcatgaaagctatggaattct 744

                                                
Query: 545 gtgttgctctcctagctagaaaattgagatatcaagt 581
           |||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgttgctctcctagctagaaaattgagatatcaagt 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_a15.g1 MSMg01no340_a15.g1 CHROMAT_FILE:
MSMg01no340_a15.g1 PHD_FILE: MSMg01no340_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:00 2005
         (557 letters)



>mm_chr14_95007461_95008417
          Length = 957

 Score = 1077 bits (557), Expect = 0.0
 Identities = 557/557 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgagtttatgtgcacaagtttatacacttgtgtgtatgtgcatatatatattcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 agatgagtttatgtgcacaagtttatacacttgtgtgtatgtgcatatatatattcttaa 778

                                                                       
Query: 61  ttttttttttttgttattttccaagtacctcaggtctggaaaaaaaaaacaattgaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttttttttttttgttattttccaagtacctcaggtctggaaaaaaaaaacaattgaccag 718

                                                                       
Query: 121 tggagacaattcaatccaccaaggtagaaataattataaaagcttgatgtataaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tggagacaattcaatccaccaaggtagaaataattataaaagcttgatgtataaaattta 658

                                                                       
Query: 181 tgtaagctaattatgaagatacatgaaaatattttaatagaataaattggttagtgcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgtaagctaattatgaagatacatgaaaatattttaatagaataaattggttagtgcact 598

                                                                       
Query: 241 taaaatatagaaaagtactttctagtgcactgaggataattgtttgctaaaaactccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taaaatatagaaaagtactttctagtgcactgaggataattgtttgctaaaaactccaca 538

                                                                       
Query: 301 tttataaaaatgaattgttgactttttaaacatattaaaaattctattagtttttgcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttataaaaatgaattgttgactttttaaacatattaaaaattctattagtttttgcttc 478

                                                                       
Query: 361 ccattgtttttgatgtgttacaatacaggagaaaatgtaaatacaagctagttataggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccattgtttttgatgtgttacaatacaggagaaaatgtaaatacaagctagttataggaa 418

                                                                       
Query: 421 cttaacaaagtctcacggagtatttttttttaaatcctggagtagtttatattattcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cttaacaaagtctcacggagtatttttttttaaatcctggagtagtttatattattcact 358

                                                                       
Query: 481 attatttcaatgattaagggcacacactagtactgtggtctttactaaggtttaaaacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 attatttcaatgattaagggcacacactagtactgtggtctttactaaggtttaaaacaa 298

                            
Query: 541 aacatgctctcccatgc 557
           |||||||||||||||||
Sbjct: 297 aacatgctctcccatgc 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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