BAC Information

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BAC

Clone NameMSMg01-340H01
Chromosome14 (Build37)
Map Location 91,444,931 - 91,445,566
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340H01.T7 (MSMg01no340_h01.b1)MSMg01-340H01.TJ (MSMg01no340_h01.g1)
ACCAG454479AG454480
length731736
length of high quality
(start - end)
653 (65 - 717)595 (76 - 670)
definitionCHROMAT_FILE: MSMg01no340_h01.b1 PHD_FILE: MSMg01no340_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:27 2005CHROMAT_FILE: MSMg01no340_h01.g1 PHD_FILE: MSMg01no340_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACAACTGGCACCTATGATGGGTATATACTCATTGGATCAAACAAGAAC
AAAACTGCTACAGTTAAGGTTTAGGACACATTTTAGAGGGAGAGGATGAA
ATATTGTAAGACATAGAGCAATTGGACATATATTTGCTGTAAGATAGTAT
AAAAGGGTATACTATCTAATAGCAAATATAAACAGAGTATAACAGGAAGT
TTTAACCATGAAATCACAAAAATATGGTCACTGAAACAAGATCAACAAAT
TGACAGCATTATTTGATATGTAAGTCCATCTAAGGGAAGTAATAAAATGT
CCTGCAATTAGATGAAATAAAGAGTCAATTTGTGATTGCTAAGAGAGGAA
GACAAAGGCTCCTCAAGGGACAAGCCCTTTGATATGTTATCTAGGCCATG
TACTAAGAATACATACATAGAACTAACACTAATGGACTCACCAAGCTATG
ATCTACCCATTTATCTATTTGCCTGTGTATTTATTGGTCATCTATTTACC
CATCATATATCTATCCATCATTTGTCTGTCTGTCTGTCTGTCTGTCTAAT
TACCTACATACCTAATAGTTACATATAATAAATGACACATTAAGCAGATA
ACAGTAATGAAGAAGAATGGGTTATAATTTGAGATTCAGTCAGGGTAGCA
TATGAAAGGAACTGTAAGGAGGAATGATACT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGGGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGGAATCA
GTCTGGCGATTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGC
AATACCTCTCCTGGGCAAATATCCAGAAGATGTCCCAACCGGTAAGAACA
CATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGG
AAAAAAACCCAGATGCCCCTCAACAAGGAATGGATACAGAAAATGTGGTA
CATTTACACAATGGAATACTACTCAGCTATTAAAGAAATGAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAA
CCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAGAAACTTAGGATACCTAAGATATAAGATACAATTTGCCAAACG
CATGAAATTCAAGAAGAACGAAGACCAAAGTGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_h01.b1 MSMg01no340_h01.b1 CHROMAT_FILE:
MSMg01no340_h01.b1 PHD_FILE: MSMg01no340_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:27 2005
         (653 letters)



>mm_chr14_91444931_91445983
          Length = 1053

 Score = 1230 bits (636), Expect = 0.0
 Identities = 636/636 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgatgggtatatactcattggatcaaacaagaacaaaactgctacagttaaggtttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tatgatgggtatatactcattggatcaaacaagaacaaaactgctacagttaaggtttag 577

                                                                       
Query: 61  gacacattttagagggagaggatgaaatattgtaagacatagagcaattggacatatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gacacattttagagggagaggatgaaatattgtaagacatagagcaattggacatatatt 517

                                                                       
Query: 121 tgctgtaagatagtataaaagggtatactatctaatagcaaatataaacagagtataaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgctgtaagatagtataaaagggtatactatctaatagcaaatataaacagagtataaca 457

                                                                       
Query: 181 ggaagttttaaccatgaaatcacaaaaatatggtcactgaaacaagatcaacaaattgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggaagttttaaccatgaaatcacaaaaatatggtcactgaaacaagatcaacaaattgac 397

                                                                       
Query: 241 agcattatttgatatgtaagtccatctaagggaagtaataaaatgtcctgcaattagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agcattatttgatatgtaagtccatctaagggaagtaataaaatgtcctgcaattagatg 337

                                                                       
Query: 301 aaataaagagtcaatttgtgattgctaagagaggaagacaaaggctcctcaagggacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaataaagagtcaatttgtgattgctaagagaggaagacaaaggctcctcaagggacaag 277

                                                                       
Query: 361 ccctttgatatgttatctaggccatgtactaagaatacatacatagaactaacactaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccctttgatatgttatctaggccatgtactaagaatacatacatagaactaacactaatg 217

                                                                       
Query: 421 gactcaccaagctatgatctacccatttatctatttgcctgtgtatttattggtcatcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gactcaccaagctatgatctacccatttatctatttgcctgtgtatttattggtcatcta 157

                                                                       
Query: 481 tttacccatcatatatctatccatcatttgtctgtctgtctgtctgtctgtctaattacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tttacccatcatatatctatccatcatttgtctgtctgtctgtctgtctgtctaattacc 97

                                                                       
Query: 541 tacatacctaatagttacatataataaatgacacattaagcagataacagtaatgaagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tacatacctaatagttacatataataaatgacacattaagcagataacagtaatgaagaa 37

                                               
Query: 601 gaatgggttataatttgagattcagtcagggtagca 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gaatgggttataatttgagattcagtcagggtagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)