BAC Information

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BAC

Clone NameMSMg01-341B19
Chromosome14 (Build37)
Map Location 71,681,993 - 71,682,473
singlet/doubletsinglet
Overlap genenone
Upstream genePpp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341B19.T7 (MSMg01no341_b19.b1)MSMg01-341B19.TJ (MSMg01no341_b19.g1)
ACCAG454989AG454990
length792818
length of high quality
(start - end)
486 (39 - 524)286 (68 - 353)
definitionCHROMAT_FILE: MSMg01no341_b19.b1 PHD_FILE: MSMg01no341_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:16 2005CHROMAT_FILE: MSMg01no341_b19.g1 PHD_FILE: MSMg01no341_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCA
AATAGTTCCTCCAGGATGGTCAGTCTGCAGACACTGCAGCTCAGCAATGC
CTGGTGACTAGCTGCAATCAAAGTGCAGTCTCCTTTCCTCAACTGGGTCT
TGATTGGCCATACATTTCAGGCTGAGATTCTCAGGAGGGTCTTCAAGGTC
TGAGAAGCAGGAAAGACCATGTAGCAGGCCCCTGGTTCCATAAGAGTCAC
TTATGGACATCCACCATAAGGTTTCACTCAAAAGTGTTGTATTACTGACA
ATGAGAGGCTCCAATACTATTGTTTGAGTGGTTTGTTGACTAGGATTCTC
TTTATTTGGTGCTAGGCACTGAACCCAGGGCTTCTCTAATGCCAAGCAAG
TGCTCTGCCACTGAACCATATCTCTAATCGCTCATCTCCAAGGTCCCTAA
GGCATCTGCCACTCATCGGGCATCTGAGAACCCCGGGTACAAGCCAAGCA
AGGAGCATGAGGGCCTATGGGTCTTCCAGGTATATGAAAGCCCCTGTTCA
GCTCACCCTGATCTGTAATAGAATAGGGAAGTGCGGCTCCTACCACAAGA
AATTTGTCCTGGAATTCACAAACCCGCTTCCACCCAGTGGCTTTCCCCTA
TCCCGCCCGTCGTGGGCAATAGACTTTTAAATTTTTTCCTTTTTTCCCCT
TCTTCCTTTTTTTCTTCTTTTTACCCCCCGTTTTTTCCCTTCTTTTTTTT
TTTTTCCCCTCTTCTCCCTCTCCCCCTTTTTTTTCTTTCTTT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCTGGGATATTGATAGGTATTGCCACTGGGGT
TTCCAGTTAAAATATGATTCTATATATTAGAAGCTGTCACTTAGGAATGG
GAATAGGCTACAAGGTAGGGAATGAATGAGTCCCCATGAGAGAGGATAGC
TGGGTGCCCCACCAGGATTTCCCTTGGGGATGGGGACAGAGAGTGTGCTA
CATGATGGGACTTGGAAGAATGGAGGGAGAGGTGAAACTATGCAGTTAGC
CTACCTACTGGCAGAAATGGCTAGTAGGTTCCCAGGGAATGCCTGTTGGA
GTTGGGTGCTGGGACTAAACAATGCATCAGGGGGGTGGGTGTTAATTGTC
TTTTTCCCCTCTTTTTTCCTTCTCTCTTTATCTTTCTCTTTTCTCTCTCC
CCTCCCCTCCTTTTTATCTTTCTTTTTTCCGTTTTTTTTTCTCCCTCTTT
TCCCGTTCCCCCCTTCTTTCATTCCTTATCCTCTCTTTCCCCCTCGCCTT
TCTCTCCTTCCCCCCCCTTTCTCTCCCCTTTCCATTTCTCTTCCTCCTCC
CTTTCTCCATCCTTTTTTCTTTCTTTTCTTCTTCCCCCTCTTTTTCTCCC
CCCCCTTCCCCGGTCTTTTTATTTCTTTCCATTCCCCCCTTTCTTTATTG
TCTCTTTCCTTCTCCCCCTCTCTCCCTTTTTCTTTTCTCCCCCCCCGTCC
CTTTTTATCTTTTTTTTATTCTCTTCCTTCCTTCCCCTCTCTTTTCTTTT
CCTTCTTTCCTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_b19.b1 MSMg01no341_b19.b1 CHROMAT_FILE:
MSMg01no341_b19.b1 PHD_FILE: MSMg01no341_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:16 2005
         (486 letters)



>mm_chr14_71681962_71682847
          Length = 886

 Score =  915 bits (473), Expect = 0.0
 Identities = 479/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaaatagttcctccaggatggtcagtctgcagacactgcagctcagcaatgcctg 65
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcaaatagggcctccaggatggtcagtctgcagacactgcagctcagcaatgcctg 453

                                                                       
Query: 66  gtgactagctgcaatcaaagtgcagtctcctttcctcaactgggtcttgattggccatac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtgactagctgcaatcaaagtgcagtctcctttcctcaactgggtcttgattggccatac 393

                                                                       
Query: 126 atttcaggctgagattctcaggagggtcttcaaggtctgagaagcaggaaagaccatgta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atttcaggctgagattctcaggagggtcttcaaggtctgagaagcaggaaagaccatgta 333

                                                                       
Query: 186 gcaggcccctggttccataagagtcacttatggacatccaccataaggtttcactcaaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcaggcccctggttccataagagtcacttatggacatccaccataaggtttcactcaaaa 273

                                                                       
Query: 246 gtgttgtattactgacaatgagaggctccaatactattgtttgagtggtttgttgactag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtgttgtattactgacaatgagaggctccaatactattgtttgagtggtttgttgactag 213

                                                                       
Query: 306 gattctctttatttggtgctaggcactgaacccagggcttctctaatgccaagcaagtgc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gattctctttatttggtgctaggcactgaacccagggcttctctaatgccaagcaagtgc 153

                                                                       
Query: 366 tctgccactgaaccatatctctaatcgctcatctccaaggtccctaaggcatctgccact 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tctgccactgaaccatatctctaatcgctcatctccaaggtccctaaggcatctgccact 93

                                                                       
Query: 426 catcgggcatctgagaaccccgggtacaagccaagcaaggagcatgagggcctatgggtc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  catcgggcatctgagaaccccgggtacaagccaagcaaggagcatgagggcctatgggtc 33

            
Query: 486 t 486
           |
Sbjct: 32  t 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)