Query= MSMg01no341_f21.b1 MSMg01no341_f21.b1 CHROMAT_FILE:
MSMg01no341_f21.b1 PHD_FILE: MSMg01no341_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:36 2005
(499 letters)
>mm_chr14_83990466_83991365
Length = 900
Score = 930 bits (481), Expect = 0.0
Identities = 493/497 (99%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagaaaatatataatcaatatccccaagataaatgctttctcattaagaccttg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggaattcagaaaatagataatcaatatccccaagataaatgctttctcattaagaccttg 641
Query: 64 cctactgcagacacctgacacttacctatgttctttagtatcatcttgtctacagagttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cctactgcagacacctgacacttacctatgttctttagtatcatcttgtctacagagttg 581
Query: 124 atttttattttgcaatcagtttagtcatttttgaaaggaaaagttcatcaattttcttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atttttattttgcaatcagtttagtcatttttgaaaggaaaagttcatcaattttcttct 521
Query: 184 aatgttatatcactacctagagataaaagtcggttctgtggcactaaaactttattacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aatgttatatcactacctagagataaaagtcggttctgtggcactaaaactttattacat 461
Query: 244 tcttaaagtctctgtatgtgttgtttctgccaatattttaaacccctttactctcatttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcttaaagtctctgtatgtgttgtttctgccaatattttaaacccctttactctcatttt 401
Query: 304 ttcttgtttttcttctttaaaccttctcttccaactaattaattttcctacttcattgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcttgtttttcttctttaaaccttctcttccaactaattaattttcctacttcattgat 341
Query: 364 ctctctacgtcaatagaaagccaaattctcacttggaagactccccatttcatactatcc 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 340 ctctctacgtcaatagaaagccaaattcccacttggaagactccccatttcatactatcc 281
Query: 424 tattgtatgacagctgggatgctctcagttatttactattttaggtgctgttgccatgaa 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 280 tattgtatgacagctgggatgctctcagttatttactattttaggtgttgttgccatgaa 221
Query: 484 ttcactct-tttttttg 499
|||||||| ||||||||
Sbjct: 220 ttcactctatttttttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_f21.g1 MSMg01no341_f21.g1 CHROMAT_FILE:
MSMg01no341_f21.g1 PHD_FILE: MSMg01no341_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:36 2005
(325 letters)
>mm_chr14_83864041_83864770
Length = 730
Score = 557 bits (288), Expect = e-163
Identities = 317/330 (96%), Gaps = 9/330 (2%)
Strand = Plus / Plus
Query: 1 actcaagaagatgagttaatagatggtgatactctggtatttttaaggatatgcaccagt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcaagaagatgagttaatatatggtgatactctggtatttttaaggatatgcaccagt 260
Query: 61 ttaaaaaaaat-taagaaatcccaagtagaaccatacataatatttcattaatagtagca 119
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaaa--tgtaagaaatcccaagtagaaccatacataatatttcattaatagtagca 318
Query: 120 ttttaaaaagtaaattacagttttaaagtaataaaactagaaaaaa-tattaaggttaaa 178
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 319 ttttaaaaagtaaattacagttttaaaataataaaactagaaaaaaatattaaggttaaa 378
Query: 179 ggtttaaaaatcttcctttgaaacaaatc-----catatttttataatagacctgtaaat 233
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 379 ggtttaaaaatcttcccatgaaacaaatcttatccatatttttataatagacctgtaaat 438
Query: 234 tcacctacatacagaaaatcaatatttacatgtttacctatatataaatcatctatacat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcacctacatacagaaaatcaatatttacatgtttacctatatataaatcatctatacat 498
Query: 294 ccaaagttattttattaattattttacctg 323
||||||||||||||||||||||||||||||
Sbjct: 499 ccaaagttattttattaattattttacctg 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 730
Length adjustment: 9
Effective length of query: 316
Effective length of database: 721
Effective search space: 227836
Effective search space used: 227836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
