BAC Information

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BAC

Clone NameMSMg01-342L17
Chromosome14 (Build37)
Map Location 111,724,794 - 111,725,284
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342L17.T7 (MSMg01no342_l17.b1)MSMg01-342L17.TJ (MSMg01no342_l17.g1)
ACCAG456212AG456213
length734727
length of high quality
(start - end)		479 (54 - 532)481 (61 - 541)
definitionCHROMAT_FILE: MSMg01no342_l17.b1 PHD_FILE: MSMg01no342_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:20 2005CHROMAT_FILE: MSMg01no342_l17.g1 PHD_FILE: MSMg01no342_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTGTAT
CAAATTAACTGTGGATATTTTACAGAATACTTAGATTTTTAAATGAAACC
TAGGTGCTGTAGGAAAGATTCCATATGATGCTGACTCCGTTGCCTTTTTT
TCTCTCTCATTATTTTTCTAGTATGTTCTTTAAATCTTTGCAATGTATTT
TGATCATATGTACTGTGTGCCACCAATTTCTCCTACATTAAAACCTCTTC
TATAGCGGTGCAAATTTGTGTGCCTCTAATCAAGTGTGAAAAACCAGCTG
GGTCTTCCCTTTTAAAAGAAACTGAATTTATCTCTCATCATGGAAGGACT
CAATGACTTTCCCAACAGATGCAAGGCTCCAATATCAAGATGCAATCCAT
ACCTGACACCATAGTTCAAGCAGAGACCCTGTGGTAAGACAGATTAGAGT
CTCCCATGGAAAACCAGCTATTATTACTGTTCTAAGCAGACACAGCCTTA
AATTAACTCCTAATAAGTTATCATTATATCTGTCAATAAACTGTACTACA
GTTTTAAGAAATCACAATTTAATTCTTTATACCTAAAAAAAAAGCTTTGT
GCATATTATATTTGTGTTTTACACGCAATTTGTTTTAAGGGGGCCCCTGC
CATTTTTGAAAAAAACATTGGAAAAATTCCGGGTTTTTCTTTAATTACAG
GCAAAAGCCCCTTTATTTTTTTTAAAACTTTAAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCTGGTTGTATCTGAGCCCCATTTTTAAACTGGGTTATTT
ATCTTTTGATGGCACTTGTTTTTGTTTTTTTTTTTACTTTATTATGCCAG
TCTCTCAGATAGATATATACTTTCTCAAATGATTTTCCCATTCTTTAGCT
TGCTGATTTGCCTGGATGGCAGTGTCTTTTTGCCATGAAGAGCTTTACAG
TCTTATGAGGTCTAGTTTGATTAGTTGTTGGTCTTATTGCCTGTGTCAAT
GGTGTTCTGTTCTGAAAGTATTTTCCTGTGCCAAGGAACTCAAGCTTATT
ACTCACTTTCTTTTAAATTCAGTCCAATGTATCTAGTCTTATGTTGAAGT
CTTTAACCGTTTGGATTTAAATTTTGTGCAAGGTGATAAATATTCATCTA
TTTGGATACTTCTGCATGTATCCATCCAATTTAACCTAGTTAAATTGAAA
GTTTCCTCCTAACACATTTTGTACGGTTGTGTTTGTCAACAGAAATTGCT
TAAATTTGGGTACATTATGGAATTTTCTATTTTCTTAATCCCTTGAAAAA
GAAAGCTTTGCTGGGTTAACTGGTTCCCGCTTACATTTGTGTCCTCTTTT
TATGAGGGAAGGTCTCAACTGAAAATTTCCTGTTAATTTAAATATGGAGT
TTTTTATTTTTCTCTCACAAAATAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_l17.b1 MSMg01no342_l17.b1 CHROMAT_FILE:
MSMg01no342_l17.b1 PHD_FILE: MSMg01no342_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:20 2005
         (479 letters)



>mm_chr14_111724711_111725588
          Length = 878

 Score =  874 bits (452), Expect = 0.0
 Identities = 476/492 (96%), Gaps = 14/492 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaactgtggatattttacagaatacttagatttttaaatgaaacctaggtgctgtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 attaactgtggatattttacagaatacttagatttttaaatgaaacctaggtgctgtagg 515

                                                                       
Query: 61  aaagattccatatga-------------tgctgactccgttgcctttttttctctctcat 107
           |||||||||||||||             |||||||||||||||| |||||||||||||||
Sbjct: 514 aaagattccatatgatactgacacactgtgctgactccgttgcc-ttttttctctctcat 456

                                                                       
Query: 108 tatttttctagtatgttctttaaatctttgcaatgtattttgatcatatgtactgtgtgc 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tatttttctagtatgttctttaaatctttgcaatgtattttgatcatatgtactgtgtgc 396

                                                                       
Query: 168 caccaatttctcctacattaaaacctcttctatagcggtgcaaatttgtgtgcctctaat 227
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 395 caccaatttctcctacattaaaacctcttctataacggtgcaaatttgtgtgcctctaat 336

                                                                       
Query: 228 caagtgtgaaaaaccagctgggtcttcccttttaaaagaaactgaatttatctctcatca 287
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 335 caagtgtgaaaaaccagctggggcttcccttttaaaagaaactgaatttatctctcatca 276

                                                                       
Query: 288 tggaaggactcaatgactttcccaacagatgcaaggctccaatatcaagatgcaatccat 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tggaaggactcaatgactttcccaacagatgcaaggctccaatatcaagatgcaatccat 216

                                                                       
Query: 348 acctgacaccatagttcaagcagagaccctgtggtaagacagattagagtctcccatgga 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 acctgacaccatagttcaagcagagaccctgtggtaagacagattagagtctcccatgga 156

                                                                       
Query: 408 aaaccagctattattactgttctaagcagacacagccttaaattaactcctaataagtta 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aaaccagctattattactgttctaagcagacacagccttaaattaactcctaataagtta 96

                       
Query: 468 tcattatatctg 479
           ||||||||||||
Sbjct: 95  tcattatatctg 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space:   407092
Effective search space used:   407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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