BAC Information

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BAC

Clone NameMSMg01-343D15
Chromosome14 (Build37)
Map Location 90,523,690 - 90,524,188
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343D15.T7 (MSMg01no343_d15.b1)MSMg01-343D15.TJ (MSMg01no343_d15.g1)
ACCAG456588AG456589
length773776
length of high quality
(start - end)		505 (32 - 536)410 (66 - 475)
definitionCHROMAT_FILE: MSMg01no343_d15.b1 PHD_FILE: MSMg01no343_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:59 2005CHROMAT_FILE: MSMg01no343_d15.g1 PHD_FILE: MSMg01no343_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCATAGTTT
GAAACAAAAGTGATTATGTCCATTATCATCATACATGCAAATTGCTAAAA
TAAAAACAATAATGTTGCTTAGGACATGTAGTTACTGCCACTAAATTAAG
AAATGATAATGCAGCACAAATTACTGTTTTGTGTTTGCTTTCTTCTTCTA
CTGCATACATGTTTGTGAATTTTGTATATACACTCTTGATATTGATTCTC
TGTATATCTTATACCATTTTAATTTTATTTTAAATTACCCAAAGTACATT
ATTTTATAGTCATAATGATTACATGAATGCAGAAACAACTGTATATTTTC
TATCTTATGAGAGATATTTTCCTGAAAATTCTATCTGAATGGATCATTAA
CTGATGATTATGGGGAAAACATGTGAAAATATTATTTTTTTTAAAATGCC
TCAGGAAGAGAAAGAATCTGTTTCAAAATCTCCAAGAAAAGCACTGAAAG
ACATGAACTTGGTCCTTGTTGTACTAAACGAATTGATCCAGGAGCTTATC
ATTAACAAGCTGCTGAGAATAGGTATGAACACACCAAAACATAACCTTGA
AACTTATTACACCATGAAACTTTTTGAGATTTGGAATTGGGCAGCTTGAT
TTTGCCCGGTTCCAATTTTAAACCTTGTTGACACCAACAATTTGTCCTTG
AAAAATGTGAAAAACTTGTTAAAGGAATCTGGAACCCTTCATAAGAATAA
TTACATATCCCTTACCCCAATTN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCTAATGGCTGAGAAGCACAT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATGCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACCCAATGGAGAACTACTCAGCTATTATAAAAATGAAATTTATGAAATTC
TCAAAAAAAAGTATGGGACCTGGGAGGCCTCCCTCCTGAATGGGGGAACA
CCTTTCCCAAGGAGCTCTCCCCCACATTGTCCCCCCGGTTTAGGGGAAAT
AATCCCCAAACCCTTTGAATACCTGTAAATATATATAATATTTTCTCTTC
CCCCGGGATTCCTTTAAAAATTATACATGGAGTTTGTGCTTTTTTCCCCC
CCTTTTATTTTGTTGTCATTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_d15.b1 MSMg01no343_d15.b1 CHROMAT_FILE:
MSMg01no343_d15.b1 PHD_FILE: MSMg01no343_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:59 2005
         (505 letters)



>mm_chr14_90523345_90524249
          Length = 905

 Score =  957 bits (495), Expect = 0.0
 Identities = 498/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatagtttgaaacaaaagtgattatgtccattatcatcatacatgcaaattgcta 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaattcatagtttgaaagaaaagtgattatgtccattatcatcatacatgcaaattgcta 785

                                                                       
Query: 67  aaataaaaacaataatgttgcttaggacatgtagttactgccactaaattaagaaatgat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaataaaaacaataatgttgcttaggacatgtagttactgccactaaattaagaaatgat 725

                                                                       
Query: 127 aatgcagcacaaattactgttttgtgtttgctttcttcttctactgcatacatgtttgtg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aatgcagcacaaattactgttttgtgtttgctttcttcttctactgcatacatgtttgtg 665

                                                                       
Query: 187 aattttgtatatacactcttgatattgattctctgtatatcttataccattttaatttta 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aattttgtatatacactcttgatattgattctctgtatatcttataccattttaatttta 605

                                                                       
Query: 247 ttttaaattacccaaagtacattattttatagtcataatgattacatgaatgcagaaaca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttttaaattacccaaagtacattattttatagtcataatgattacatgaatgcagaaaca 545

                                                                       
Query: 307 actgtatattttctatcttatgagagatattttcctgaaaattctatctgaatggatcat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 actgtatattttctatcttatgagagatattttcctgaaaattctatctgaatggatcat 485

                                                                       
Query: 367 taactgatgattatggggaaaacatgtgaaaatattattttttttaaaatgcctcaggaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 taactgatgattatggggaaaacatgtgaaaatattattttttttaaaatgcctcaggaa 425

                                                                       
Query: 427 gagaaagaatctgtttcaaaatctccaagaaaagcactgaaagacatgaacttggtcctt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gagaaagaatctgtttcaaaatctccaagaaaagcactgaaagacatgaacttggtcctt 365

                              
Query: 487 gttgtactaaacgaattga 505
           |||||||||||||||||||
Sbjct: 364 gttgtactaaacgaattga 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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