BAC Information

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BAC

Clone NameMSMg01-343F12
Chromosome14 (Build37)
Map Location 54,388,007 - 54,388,320
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325
Downstream geneA730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F12.T7 (MSMg01no343_f12.b1)MSMg01-343F12.TJ (MSMg01no343_f12.g1)
ACCAG456677AG456678
length768756
length of high quality
(start - end)		354 (41 - 394)313 (71 - 383)
definitionCHROMAT_FILE: MSMg01no343_f12.b1 PHD_FILE: MSMg01no343_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:08 2005CHROMAT_FILE: MSMg01no343_f12.g1 PHD_FILE: MSMg01no343_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGCTCAGAGCCCCATTTTTTAATGGGGTTATTCGATTTTCTGG
AGCCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCC
GATTTGGGATATGTAAAGATCCTTTCCGAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAACTTTATGAGGT
CCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTC
AGGAATTTTTCCCCTGTACCCAAATCTTCGAGGCTCTTCCCTACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TATATTTGACCCTACTACAAGGATATAGGAATGGATCAATTCGAATTCTT
CTATATGATGATTATTCTTAATGCCAGTTCCTTTTGTTGTAAATGCTGTC
TTTTTTTTCTTGGTTCGTTTTAATTTCCTTCTTTTTCATTTTTTGTATTC
TTTGCGCGGGTTGTTTATTTTTTGGCTCCTTTTTTTTTTTTCTTTTCATA
TTTTATCCCTGTCTTATTTCATTTATATTATCTGACTCCTCTCTCTCTTT
ACTTTTCTCTTTCCTTTTTCTCCCCTCCCTTTTGTCTCTTTTCCTTCTCC
TCCTTTTTTTCATTTTTTTCGTTACCTTCCTCTTTTCACTCTCCCTCATT
CTATTACCCCTCTTTCTG

ACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGCTACATTCTAATTCAGTATATTGTTT
GTGTTGTCGGACTTTACCTCAGCTCCCTTATCTGTCCCTCGGATTCCCAG
GTCTTGTCTCTTTATGTGTTTCAAAGTTCTTGGAAATTTTGGGTATGCTC
ATTAGTTTTCTTTCTTCCCATGTCTCTGATCCACTCTGTCCAATATTGTC
TGTCAGCGATGCTTTCCACTGTGTTTAATTTAATTTCCCAGCATTTATAT
TTGGTTCATTTTCAGAGTCTCAATTTTCTTGCTGAGTTTTTCTTCATGTC
TTTCAACTTCCCCTCCAAGTTACTGTTTCACGCACTTTGTAACTTCCTTG
TCTAGGTCCTGAACTGAATTTCTTGCTCTCTTCATCTGCTTATTTGAGTG
CTATCTATTATCATTGACCTTTTTTTGTGATGGTGTTCTCTTTTTTCTTT
ATTTATATATCCCCCCCCTGTCTTTTTTTCGTTTTATTTATTCCCGCTTT
TTTCTTTCTTTTCCTTCTTTTTCTTTTTTTCTTCTGTCTTTTATTTTTTT
TTCTGTTTCCAATTTCTTCTTTTTTTTTATTTCTTCTTTCTTCTTCCTCT
TTTCTTTTCTTTTTTTCTTTTTTCCTTTTTCTTTCTCCTTCACTTATATC
ATTTTTAACCAATTTTTATTTCTTTTTTATTCCTACACTTTCTTCTTTAC
TTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f12.g1 MSMg01no343_f12.g1 CHROMAT_FILE:
MSMg01no343_f12.g1 PHD_FILE: MSMg01no343_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:08 2005
         (313 letters)



>mm_chr14_54387807_54388520
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 308/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctacattctaattcagtatattgtttgtgttgtcggactttacctcagctccctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tctgctacattctaattcagtatattgtttgtgttgtcggactttacctcagctccctta 455

                                                                       
Query: 61  tctgtccctcggattcccaggtcttgtctcttt-atgtgtttcaaagttcttggaaattt 119
           |||||||| ||||||||||||| |||| ||||| |||||||||| |||||||||||||||
Sbjct: 454 tctgtcccacggattcccaggttttgtgtctttaatgtgtttcagagttcttggaaattt 395

                                                                       
Query: 120 tgggtatgctcattagttttctttcttcccatgtctctgatccactctgtccaatattgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 394 tgggtatgctcattagttttctttcttcccatgtctctgatccactctgtccaatatcgt 335

                                                                       
Query: 180 ctgtcagcgatgctttccactgtgtttaatttaatttcccagcatttatatttggttcat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgtcagcgatgctttccactgtgtttaatttaatttcccagcatttatatttggttcat 275

                                                                       
Query: 240 tttcagagtctcaattttcttgctgagtttttcttcatgtctttcaacttcccctccaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttcagagtctcaattttcttgctgagtttttcttcatgtctttcaacttcccctccaag 215

                         
Query: 300 ttactgtttcacgc 313
           ||||||||||||||
Sbjct: 214 ttactgtttcacgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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