BAC Information

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BAC

Clone NameMSMg01-343H15
Chromosome14 (Build37)
Map Location 91,078,777 - 91,079,241
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451, LOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343H15.T7 (MSMg01no343_h15.b1)MSMg01-343H15.TJ (MSMg01no343_h15.g1)
ACCAG456777AG456778
length7661,023
length of high quality
(start - end)		470 (30 - 499)---
definitionCHROMAT_FILE: MSMg01no343_h15.b1 PHD_FILE: MSMg01no343_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:19 2005CHROMAT_FILE: MSMg01no343_h15.g1 PHD_FILE: MSMg01no343_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCCTATAGGTACAGGATCCGCGGAATTCAAATGAAGT
ATTAATGGCTGAAAACAAATATTTTCTTGTCTTTCAAGTAGGGAATATAT
GTGTTATTGCAATACAATTGTTGATTTTATACTCCTTCTTAGTTATACTG
TCATTAGGAGCTAACATCCTTGCATAATGCAGAAGGCATAAGTTTCTTCT
GTTGTTTCCTGCAAGGTTTTAAACTATTTTTAAAATGAGAAGATTATAAA
AGTAAAATACAACTTCTAAATTCTTTTATAACTATTTGCATGTTATGGGT
CACTTGATTCCATGCCTACTTCAGCTAAAAGACGATCTTCATTTAAATAA
TAAGTGTTTCGTCGAGTCTACCCAAATAGGTCTAGTTTTAGCCTTAAATT
TCAGTTGAAAGAGAATTATTCGTATGTACAAAATAGGCTTCTCAAGTCAG
ATAATTAAGCTATAGTTTGTCCTACTTCTTAGTCCTACATAAATATTCCA
ATGCAATAAATGAACTATGTAATAAAAAAGAAACTCTTTAAAAAGCAGAA
TAGAAAATAAGTGCTGCTTACCCTTAGATTAAAAAATGTCCTAAAGATGG
AATACCGATTGAAAAGTTTCGCCTTAAAAAGTGGCCGGAACTTGTTCAAA
ATTTTTTTATGAAAAATCAGGTTACTCTCCTTGGGGCAAACTTAAGGCTT
ATTGAGTTTATATCAATAAATTAATTGTAACCTTTATAAGAAAAAATCTG
TCCGGGAATATTTTTN

TGGGCAGAGCGGGGGCGCGCCGGGTCTGCCATCTCATTGGAGGCGTTATA
TTGGAGGTGGCGTACGACAAATTGTTCGAGATCTGATTAACGCACAGAGG
ATTGATATATGCGACGACAGCACGCGAGACAACAGCAACTGTCCCAGATT
GGCCGGGTTGGTATGACACATTCTATGATGCGTTTTGCCGCGTGCCGACT
GTAGCCGCAGGGACCAGGAGCCCTAATAAAAACACCTTCTAAGCTAAACA
CGTGATCGCCTTCAGTGGGCAAATAGAAAGTAAGCGTATCGCCAACAGCT
GAGATATACAGAGACGCGCGGGTTTAACTCGTGTTAAGGCATAACGTATC
TTGTTAAGGAATAAGTCTTATCCTGTTTACCGTGCGTTGCACACGAAGGT
GACATTCTTCATCCTATTGCTCCATTATATACGGCGCACACGGCCAAGCG
GTCTAATGCGCCGTTGATGCGACTGTGGTTATTCACGATCAAAGTCCTCG
CGGATGGGATTCTATATCTTTCGGGGGCTCACACGCGTCTTCGCCCGGCC
ACCCTAAGGTACTATCGCGCGCGCGCATGTTCAAACGAGATTGNTCTCCT
TCTTCGTGGTGAGTAACGCTTAGCTATTGTTGACCCGCCGCAGCCGTTCT
TTCATGACGTTTCGATGCATTGTTATTCTCAGCAGCGCGACCCGCCCTGT
TGTTCTCATGTGGTTTGATTTCTATATCCCCTCGTCTGACGTATATGCAC
TCTATCCTCATCACGAACCTGGAGCTTCTGACTCTTATGTCGGTGAACAC
TATATCCGGACTCGACCTATACACATTACTATAATGCAAGTATGGTAAGT
CAGCAGAATGGACTGCCATTCGATATGTGGTGTGTTGGCGCTATGCTGAC
GAGTGAGGCGCGCCGATCGTTTATGCGGCCGACCGTCACGTGGATGCGAT
TCCGCTTCTCTTCTGCATTATTATTACCGCGCCTAGATACCATCTACAAC
AGATCGATCAATAACGCTCGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_h15.b1 MSMg01no343_h15.b1 CHROMAT_FILE:
MSMg01no343_h15.b1 PHD_FILE: MSMg01no343_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:19 2005
         (470 letters)



>mm_chr14_91078571_91079441
          Length = 871

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%), Gaps = 1/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattc-aaatgaagtattaatggctgaaaacaaatattttcttgtctttcaagtaggga 65
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattcaaaatgaagtaataatggctgaaaacaaatattttcttgtctttcaagtaggga 612

                                                                       
Query: 66  atatatgtgttattgcaatacaattgttgattttatactccttcttagttatactgtcat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atatatgtgttattgcaatacaattgttgattttatactccttcttagttatactgtcat 552

                                                                       
Query: 126 taggagctaacatccttgcataatgcagaaggcataagtttcttctgttgtttcctgcaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 taggagctaacatccttgcataatgcagaaggcataagtttcttctgttgtttcctgcaa 492

                                                                       
Query: 186 ggttttaaactatttttaaaatgagaagattataaaagtaaaatacaacttctaaattct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggttttaaactatttttaaaatgagaagattataaaagtaaaatacaacttctaaattct 432

                                                                       
Query: 246 tttataactatttgcatgttatgggtcacttgattccatgcctacttcagctaaaagacg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttataactatttgcatgttatgggtcacttgattccatgcctacttcagctaaaagacg 372

                                                                       
Query: 306 atcttcatttaaataataagtgtttcgtcgagtctacccaaataggtctagttttagcct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atcttcatttaaataataagtgtttcgtcgagtctacccaaataggtctagttttagcct 312

                                                                       
Query: 366 taaatttcagttgaaagagaattattcgtatgtacaaaataggcttctcaagtcagataa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 taaatttcagttgaaagagaattattcgtatgtacaaaataggcttctcaagtcagataa 252

                                                        
Query: 426 ttaagctatagtttgtcctacttcttagtcctacataaatattcc 470
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttaagctatagtttgtcctacttcttagtcctacataaatattcc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space:   396060
Effective search space used:   396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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