BAC Information

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BAC

Clone NameMSMg01-343H18
Chromosome14 (Build37)
Map Location 30,287,021 - 30,287,422
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneErc2, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343H18.T7 (MSMg01no343_h18.b1)MSMg01-343H18.TJ (MSMg01no343_h18.g1)
ACCAG456783AG456784
length803770
length of high quality
(start - end)		271 (32 - 302)416 (63 - 478)
definitionCHROMAT_FILE: MSMg01no343_h18.b1 PHD_FILE: MSMg01no343_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:20 2005CHROMAT_FILE: MSMg01no343_h18.g1 PHD_FILE: MSMg01no343_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGGTATTT
TATACTTTAAAATATTGATTACATGTTGAAATAAAATATATATTTTTTAG
GTATGTTGGGTCAAATGAAATATACTGTTGGAATTACTTATATCTATATT
TTATATTTTGGGTATTAAGAAATTTAAGATTACATGTATTGTTAATGTTA
TATTTACTTTATCAAGTGTTGAATGTTAAGATGAAAATAGGGAAATGTTT
TAATTGTTTGGAGAATGACAGGGAATCTTGACATATTGGATACTGAAGAA
TAATAGTATCTATGTTTAAAGCTACAGTAACAACAGGACTTTAACACTAA
TAATCCTTGATGACTGGAAGGAAGAGCCAGTGGAGACTAACGTATGACAG
CATTCGCGCAGATGCGTCGACTTCCTGTCTCTTTTTCGCGTATCGGCTCC
TCTATCTTGTTTTCTTTTCCGTTCTTTTTATTCTCTCCTTTCTCTTATCC
CCCCCTTTATTTTGTATTTATTTTCTCTTCTCCCTTTTTCTTGTTCCCGT
TATCCCCTCTTCCTTCTTTCCGCCGTTCTCCCCGTCTCTCTCTTTTTCCC
CCTCTTTTTTTTACTTCCCCCTTCTTCCCTCCCCTCTCTCAACTTTTTTT
TCTTTCTTCCCTCTCTTCCCCTATTTTTCTTTCTTACTTCCCTCCACTCC
CCTCACTTCTTCCTCGTCTTCCTTCCCCTCTCTCTTTTTCCCTTTTTTTC
TCTTCCTCCCACCGTTCTCTTCTCCCCCCTCTACTTATTTCTCTCCTCTT
CCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAACTACAGTGACTCTAAAGAAGAACCTATAATAATTAG
CTACAGTTTGGGGCTACAGTTTGGGGCTACAGTGAAGACTGGTTCAGAGG
CTGCCAATGACTGACCAGTAACATCGGGCCAACTATTACTTGTCTGTATT
GTCATATCAACATATGCTAAATGGACAGAGTAGGGAAGAATGGAATCATC
GAGGCAGAATTATAGTCATCACTGTATTCAGAATGGCATGGTTCACTTTT
GTGTTTCCTCTAGACTCTGTGGATGCCAGGAGCCATCAAGGAGGAGCTAA
AACCTAGCAAGTGATCTTCCTGAGATGGTTCCACCATTGACTGTACAATT
AATAACAGGTGTGCTTCTATAGGCAAGGACCAGAAGGATTTCATTTTAGG
AATGATCCCTGCTATTAATATGCTTTTAGAATATATAGTTTTAGAATATA
TATGTGGGGGGTTATTAATTTTNGCACCTGTCCTTGGTCTCTCCCATCCT
TTTTGTCCCCCCTTCTTTTTCTCTCGCCCCTTCTCTCTCTTTCTTTCTTT
CTCTTTTTTTATGTTTACTTTTCACCCTTCTTCTTTTTTTTTTTCCCCAT
CTTCTTCACCCTCTCTTAACTATCTATTTTCCTTTTTCCCTTTTTCTTCC
CCTACCCTTTTTCTCTCCTTCACCATATTTCTCTTCCTTTTCCTTACTTC
ACCTTTCTTCTACTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_h18.g1 MSMg01no343_h18.g1 CHROMAT_FILE:
MSMg01no343_h18.g1 PHD_FILE: MSMg01no343_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:20 2005
         (416 letters)



>mm_chr14_30286807_30287622
          Length = 816

 Score =  731 bits (378), Expect = 0.0
 Identities = 401/416 (96%), Gaps = 14/416 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactacagtgactctaaagaagaacctataataattagctacagtttggggctacagttt 60
           ||||||||||||||||||||||||||||||||||||||| ||    ||         |||
Sbjct: 215 aactacagtgactctaaagaagaacctataataattagc-ac----tg---------ttt 260

                                                                       
Query: 61  ggggctacagtgaagactggttcagaggctgccaatgactgaccagtaacatcgggccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggctacagtgaagactggttcagaggctgccaatgactgaccagtaacatcgggccaa 320

                                                                       
Query: 121 ctattacttgtctgtattgtcatatcaacatatgctaaatggacagagtagggaagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctattacttgtctgtattgtcatatcaacatatgctaaatggacagagtagggaagaatg 380

                                                                       
Query: 181 gaatcatcgaggcagaattatagtcatcactgtattcagaatggcatggttcacttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcatcgaggcagaattatagtcatcactgtattcagaatggcatggttcacttttgt 440

                                                                       
Query: 241 gtttcctctagactctgtggatgccaggagccatcaaggaggagctaaaacctagcaagt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcccctagactctgtggatgccaggagccatcaaggaggagctaaaacctagcaagt 500

                                                                       
Query: 301 gatcttcctgagatggttccaccattgactgtacaattaataacaggtgtgcttctatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcttcctgagatggttccaccattgactgtacaattaataacaggtgtgcttctatag 560

                                                                   
Query: 361 gcaaggaccagaaggatttcattttaggaatgatccctgctattaatatgctttta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaggaccagaaggatttcattttaggaatgatccctgctattaatatgctttta 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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