BAC Information

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BAC

Clone NameMSMg01-343K22
Chromosome14 (Build37)
Map Location 16,591,267 - 16,591,616
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc4a7, Nek10, Lrrc3b
Downstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343K22.T7 (MSMg01no343_k22.b1)MSMg01-343K22.TJ (MSMg01no343_k22.g1)
ACCAG456932AG456933
length785795
length of high quality
(start - end)
414 (33 - 446)349 (64 - 412)
definitionCHROMAT_FILE: MSMg01no343_k22.b1 PHD_FILE: MSMg01no343_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:36 2005CHROMAT_FILE: MSMg01no343_k22.g1 PHD_FILE: MSMg01no343_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATTTTA
TTTCCGTAGTCCAGGTTCGTGAGCTCTTTGTATATATTGGATATTAGTCC
CCTGTCAGATTTAGGGTTGGTAAAGATCCTTTCCCAATTTGTTGGTGGCC
TTTTTGTCTTATTGACAGTGTCTTATGTCTTACAGAAGCTTTGCAATTTT
ATAAGGTCCCATTTGTCAATTCTTCTTCTTTTTATTTTTTTATTAGGTAT
TTTCCTCATTTGCATTTCCAATGCTATACCAAAGTCCCCCATACCCTTCC
CCCCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGT
ACTGAGGTATATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGAT
GGCCTACTAGGCCATCTACTTATACATATGCAGCTAGAGACACGAGCTCC
AGGGGGTACTGGTTAGGTCATATTTGTTGTTCCCCCATAAGGTTGCAGAC
CCCTTTACCTCCCTGGGGAATTTTCCAATCTCCCCCTTTGGGGGGCCCTG
TGATCCTTCCACACATTAACTATGAACTTCCCTTCCTGGGGTTTCTTACG
CCCTCGCAAATTCTCCTTAAAACCCCTAATTCCTGGATTTTCTTAAATTT
TTTGTTCGTATAATTACTATTTTCCCCTTCTCCTGTTCTACTAACTCGAA
TGCAATTCTTCTCCTTGTTATTTTCTCTATAACCCTTCTTTTCTCTCTTT
ACTCCCTCTTTTTTCGCTTTTCTACTTCCCCTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGACAGAATATGAATTAACATCCAAATGTACTTAAAG
AAGACATGATTGAAGTCCAAGTAAATACAAATAAATGGCTAAATGAACTA
AGACGACAGTTGAGGATATGAAATTGAATGGAATAAAGATTGACAAACCA
AAGCAAACTAAAATGAAGCTGGGAATGAGCAATTCAGGAAGTCTAAGAAA
AAAACTCTGGAAGGTTTTCCCCGTATAAGAGATTACACCAGTCAATCTAG
GCTTAAAGACAGAGTAGAGAAATAGATCAACCAGAGGAAAATGACAAATT
CACAGAGTGAATTTAGAGGAACTTTGAGATACCAAGTAAAGACCAAATCC
ACAGCTTATGGCCATAGAAGGGGAAGAATTCTAGGTCAAAGGCATAGAAA
ATATCTTCAATAAAGTAATAGAGACTTTTCTATACTCAAGAGAAGAACTA
TCCCTCCCGGTACCAGAGGTCCACACGAAACCAAATGTACGGGACTTGGA
AAGAAATCCCCCCTGTCCTTGTAAAGCACAACCTTGTCCTGGAAAGCATC
ACCCTGCCTTGTTAAGCACTACCCTGTTCTGTAAAAGCCCTGCCTTGGCT
TGTAAAGCCCTACCTCGCTCGGTAAAAACCAACCGGTCCTTGTAAGACTC
CCCTGTTCTTGGTTAGGTCCCACCTGGTCTGTAAAAGAACACTCGGTGTG
GGTGGCCTCACCCGTGCTGGTAGTCTCCTCCCTTTTTTTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_k22.g1 MSMg01no343_k22.g1 CHROMAT_FILE:
MSMg01no343_k22.g1 PHD_FILE: MSMg01no343_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:36 2005
         (349 letters)



>mm_chr14_16591067_16591816
          Length = 750

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacagaatatgaattaacatccaaatgtacttaaagaagacatgattgaagtccaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agacagaatatgaattaacatccaaatgtacttaaagaagacatgattgaagtccaagta 491

                                                                       
Query: 61  aatacaaataaatggctaaatgaactaagacgacagttgaggatatgaaattgaatggaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 490 aatacaaataaatggctaaatgaactaagacaacagttgaggatatgaaattgaatggaa 431

                                                                       
Query: 121 taaagattgacaaaccaaagcaaactaaaatgaagctgggaatgagcaattcaggaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taaagattgacaaaccaaagcaaactaaaatgaagctgggaatgagcaattcaggaagtc 371

                                                                       
Query: 181 taagaaaaaaactctggaaggttttccccgtataagagattacaccagtcaatctaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taagaaaaaaactctggaaggttttccccgtataagagattacaccagtcaatctaggct 311

                                                                       
Query: 241 taaagacagagtaga-gaaatagatcaaccagaggaaaatgacaaattcacagagtgaat 299
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taaagacagagtagaggaaatagatcaaccagaggaaaatgacaaattcacagagtgaat 251

                                                             
Query: 300 ttagaggaactttgagataccaagtaaagaccaaatccacagcttatggc 349
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 250 ttagaggaactttgagataccaagtaaagaccaaatccatagcttatggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 750
Length adjustment: 9
Effective length of query: 340
Effective length of database: 741
Effective search space:   251940
Effective search space used:   251940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)