Query= MSMg01no344_a12.b1 MSMg01no344_a12.b1 CHROMAT_FILE:
MSMg01no344_a12.b1 PHD_FILE: MSMg01no344_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:06 2005
(541 letters)
>mm_chr14_108694657_108695597
Length = 941
Score = 1025 bits (530), Expect = 0.0
Identities = 536/538 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttagctgttccccacatgctaactgctactgctgcttctacttcagctttcag 63
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 ggaattcttagctgtttcccacatgctaacttctactgctgcttctacttcagctttcag 682
Query: 64 gaccagaaaacacaagcttttgtcctgttttcatcaccatcatagctacctagagtttac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaccagaaaacacaagcttttgtcctgttttcatcaccatcatagctacctagagtttac 622
Query: 124 aaagtcattctaccaacctaactctgctttactctctatacttattcttggaaaacgggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtcattctaccaacctaactctgctttactctctatacttattcttggaaaacgggt 562
Query: 184 cccagggtctctattgaagttttgggcctcagtgattacgtcaagaagtaacatgtttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccagggtctctattgaagttttgggcctcagtgattacgtcaagaagtaacatgtttaa 502
Query: 244 gagcatttttacatgatatgcactttatattagtaaaactttctttgctaaatgaaaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcatttttacatgatatgcactttatattagtaaaactttctttgctaaatgaaaaga 442
Query: 304 aagaaaaaattgatctataacatgtctcaaaacattttttcaattttagagttaaaatat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaaaattgatctataacatgtctcaaaacattttttcaattttagagttaaaatat 382
Query: 364 tttatgcagtataatttcgctttaagaagtaatttgttactaggtgatccaatagttatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatgcagtataatttcgctttaagaagtaatttgttactaggtgatccaatagttatt 322
Query: 424 ttgcattatctgctgaatgcaaaatcaatgtttatgtaataggtactctcagaagaagat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcattatctgctgaatgcaaaatcaatgtttatgtaataggtactctcagaagaagat 262
Query: 484 atatgaatagtactgaagtagttatattaaacctgaagaatattatcccctaagtttt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatgaatagtactgaagtagttatattaaacctgaagaatattatcccctaagtttt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_a12.g1 MSMg01no344_a12.g1 CHROMAT_FILE:
MSMg01no344_a12.g1 PHD_FILE: MSMg01no344_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:06 2005
(578 letters)
>mm_chr7_26038273_26039250
Length = 978
Score = 592 bits (306), Expect = e-173
Identities = 408/468 (87%), Gaps = 42/468 (8%)
Strand = Plus / Plus
Query: 153 ttta-ttatttatttatttgtttttctgagacagagtttctctgtatagccttggctatc 211
|||| |||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||
Sbjct: 311 tttatttatttatttatttatttatctgagacagggttactctgtatagccttggctatc 370
Query: 212 ctagaactcactgtgtagaccaagctagtctcaaaatgagagatatgcctgcctctacct 271
||| |||||||||||||||||||||||||||||||| |||||| | ||||||| |||||
Sbjct: 371 ttagtactcactgtgtagaccaagctagtctcaaaatcagagatctacctgcctgtacct 430
Query: 272 gaagagtgctgagattaaaggtgttctccaccactgccctgctcaaaatattttttaaaa 331
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 431 caagagtgctgggattaaaggtgttctccaccactgcccagctcaaaatattttttaaaa 490
Query: 332 taacaaaataaatatacaaataaaatttaatttatagtggtaataaatataaagcataaa 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 491 taacaaaataaatatacaaataaaatttaatttatagtggtaataaatataaagaataaa 550
Query: 392 a-catgtatatatatgctttatatacatgcaaatatatatatatatat------------ 438
| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 551 aacatgtatatacatgctttatatacatgcaaatatatatatatatatatatatatatat 610
Query: 439 ----------------------------gcagagtgaccatcgacctcattgatgtgagc 470
||||||||||||||||||||||||||||||||
Sbjct: 611 atatatatatatatatatatatatatatgcagagtgaccatcgacctcattgatgtgagc 670
Query: 471 accctatgccttacagacacacagtaacagacgtcactggctctgtgaaattgatgatgt 530
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 671 accctatgccttacagacacacagaaacagatgtcactggctctgtgaaattgatgatgt 730
Query: 531 atcctagaaaccctggtgtctgggtggctgagacagagtatcctaagt 578
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atcctggaaaccctggtgtctgggtggctgagacagagtatcctaagt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
