Query= MSMg01no344_j16.b1 MSMg01no344_j16.b1 CHROMAT_FILE:
MSMg01no344_j16.b1 PHD_FILE: MSMg01no344_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:50 2005
(464 letters)
>mm_chr14_26177202_26178065
Length = 864
Score = 866 bits (448), Expect = 0.0
Identities = 457/460 (99%)
Strand = Plus / Plus
Query: 5 gaattcttctgtgtcctgtcagcatccaaggtcagcaaggggtgccaggcaggggagtgg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgtggcctgtcagcatccaaggtcagcaaggggtgccaggcaggggagtgg 264
Query: 65 accacagtcccagccctgaagctggtagggacggcacaaagccagagagttgggtaagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accacagtcccagccctgaagctggtagggacggcacaaagccagagagttgggtaagtt 324
Query: 125 gtgctgctgagcgtcaaaacgtgtcaggtctcgccccagcaggctgctccctggaattag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgctgctgagcgtcaaaacgtgtcaggtctcgccccagcaggctgctccctggaattag 384
Query: 185 cagatacaatcctggagtcagagagccatctccttggatcagctgtgcagggcaagacgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagatacaatcctggagtcagagagccatctccttggatcagctgtgcagggcaagacgg 444
Query: 245 ggcggggaggagaaagccattcatgggcggaaagagtttcgagtggcctgatgccagggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcggggaggagaaagccattcatgggcggaaagagtttcgagtggcctgatgccagggc 504
Query: 305 atctggggtcacagtgcggtccccaagtcctttcccaaaccaggacatccctagctgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctggggtcacagtgcggtccccaagtcctttcccaaaccaggacatccctagctgtct 564
Query: 365 gagtctgatatcaccattgaatctgcaatttaagacagcctgctgaacctgtctgtctgt 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 gagtctgatatcaccattgaatctgcaacttaagacagcctgctgaacctgtctgtctgt 624
Query: 425 caccccacaatccacagttatctgaggaagcttaatggag 464
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 caccccaccatccacagttatctgaggaagcttaatggag 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_j16.g1 MSMg01no344_j16.g1 CHROMAT_FILE:
MSMg01no344_j16.g1 PHD_FILE: MSMg01no344_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:50 2005
(526 letters)
>mm_chr14_26336958_26337883
Length = 926
Score = 930 bits (481), Expect = 0.0
Identities = 514/525 (97%), Gaps = 2/525 (0%)
Strand = Plus / Minus
Query: 3 ggagatctgcccgcttctgcctccctagtagtgggattaaaggtgtctgccactacacct 62
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 906 ggagatctgcccgcttctgcctccctagtggtgggattaaaggtgtctgccactacacct 847
Query: 63 ggttttccacattggtcttttgagacagggt-ttctcactgaacctggagctcaccagtt 121
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 846 ggttttccacattggtcttttgagacagggtctt-tcactgaacctggagctcaccagtt 788
Query: 122 ctgcttgactggccagctgctgagcctcagggctacctgtctacctgtctccacctcccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctgcttgactggccagctgctgagcctcagggctacctgtctacctgtctccacctcccc 728
Query: 182 atcctccagacccagtgtgtagcagaggagagccacagatagttgggtatttctaatgca 241
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 727 atcctccagactcagtgtgtagcagaggagagccacagatagttaggtatttctaatgca 668
Query: 242 tttctcttattctttaataaatacacaacataaataaataaaacaaaatttatgttcttt 301
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 667 tttctcttattctttaataaatacacagcataaataaataaaacaaaatttatgttcttt 608
Query: 302 cgggttctgattttagaatctagtcacaaatgtcttaagtttcttgggccaaatttctac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cgggttctgattttagaatctagtcacaaatgtcttaagtttcttgggccaaatttctac 548
Query: 362 aaactcactacagtgaagttttggcagaagagtgtttgcagagaaaacaaggcagagagg 421
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 547 aaactcactacagtgaagttttggcagaagagtgtttgcagagaaaacaaagcagagagg 488
Query: 422 taagtgcctgccctgagcatataacaaagcctaggtctcaggtgctgggagcgttcagca 481
| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 487 ttagtgcctgccctgagcatatgacaaagcctaggtctcgggtgctgggagcgttcagca 428
Query: 482 gcagcctctctccagcctatgcctagccctacacaatctctgggc 526
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 427 gcagcctctctccagcccatgcctagccctacacaatctctgggc 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
