BAC Information

Click to search

BAC

Clone NameMSMg01-344L18
Chromosome14 (Build37)
Map Location 57,010,671 - 57,011,238
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a
Downstream geneRnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344L18.T7 (MSMg01no344_l18.b1)MSMg01-344L18.TJ (MSMg01no344_l18.g1)
ACCAG457727AG457728
length762750
length of high quality
(start - end)		513 (77 - 589)567 (68 - 634)
definitionCHROMAT_FILE: MSMg01no344_l18.b1 PHD_FILE: MSMg01no344_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:00 2005CHROMAT_FILE: MSMg01no344_l18.g1 PHD_FILE: MSMg01no344_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTAAAAGAGCG
CGGAATTCCAAGGCATTACATCCATCCCCACTTGTGTTTTTTTCCTTTAT
AAACCTGTATCTTTGTCAGGGTTTCTATTCTTGCATAAACATCATGACCA
AGAAGCAGTTGGGAGGAAAAGGTTAATTCAGCTTATACTTCCATACTGCT
GTTCATCACCGAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAG
GAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTATTGGCTTGCTTCCCC
TGGCCTGCTCTCTTATAGAATCAAGACTACCAGCCCAGAGATGGTCCCAC
CCACAAGGGGCCTTTCCCTCTTGATCACTAATTGAGAAAATAAATGCCTT
ACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTTTCTGT
GATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAACGTGG
ATACCCTGTTTCACCATCGCTCTCCTACCCTGCTGTATCAAGGCGGATCG
AGGTCACAAATAAACCCTCATGTGTTTGCATCGGATCCTGGGTCCTTGGT
GGTCTTCTTGGGGGTCTTACCAATCAGGCATATCCGTCCACACCAACTTA
ACATGGATAAGGTTCTGAAACCCAACTGCCTTCCTTGATACACAGTTGGG
ATTGTCTCGTTTTTCTTTTTTTAAATTAATTTTTTCTAGGGGTAAACTGC
AATGACTTAATG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGGGTAGGGACAGATGAACCAGTCCTGGAGAAC
AGCAACAGGACTGCATCTGAGATGGAGAAACAAGAAGCACCTCAGCCAAG
GTCTCTAAGATTGGAGCTCAACAGGTTGGAGCTCCATGAAAACAAACTGA
TGAAGTTGACTCACAGAGGTGGCTCGCAATCCAAGTGACCTGTTTCAATC
ACTTTGGCTCTTGGTGGACTAGCACTGAGTGAGCTCCACAGTCAAGCTAG
CTATGCCTCGCCTAGGCTGGTGATGAAAGATGTGGAGTCAGCATGGGAGG
AAACTGGGGGGTGGGGGGCTACAACTAAACAGATTCCAACAAGGAGAATT
CTATAAAGGAGGGCACCTGTAGGCTTCAGCTCAGCCCACAAAAGGCTACC
AACCATCCTAACTGACCACATTATGATCAAGATGAGGAGAAAAGAAGACG
CCAAGGCAAGTACAATAGTTTGCCCTTATCCACAGTGTGATATGCCTGTG
TAAAATCCCAGTAAGTACCTATGATAATATTTCTAAGACGTTCTAAATTT
AATTAGCAGATCCTGAAGGGGTGAGAAATGAAGTCAGTCTGTTAACAAAC
TACAAGCTGCCATCAAAAAGACCCTCCATTCCCATTCTATAAAGGATGTT
AAAATCTTAACTCTGTTTTCTTGGTGCTTCTGGGGTCCTGTTTACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_l18.g1 MSMg01no344_l18.g1 CHROMAT_FILE:
MSMg01no344_l18.g1 PHD_FILE: MSMg01no344_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:00 2005
         (567 letters)



>mm_chr14_57010471_57011438
          Length = 968

 Score =  992 bits (513), Expect = 0.0
 Identities = 554/573 (96%), Gaps = 11/573 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtagggacagatgaaccagtcctggagaacagcaacaggactgcatctgagatggag 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgggtagggacagatgaaccagtcctggagaacagcagcaggactgcatctgagatggag 260

                                                                       
Query: 61  aaacaagaagcacctcagccaaggtctctaagat--tggagctcaacaggttggagctcc 118
           ||||||||||||||||||||||||||||||||||  ||     | |||||||||||||||
Sbjct: 261 aaacaagaagcacctcagccaaggtctctaagatcatg-----cgacaggttggagctcc 315

                                                                       
Query: 119 atgaaaacaaactgatgaagttgactcacagaggtggctcgcaatccaagtgacctgttt 178
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 316 atgaaaacaaactgatgaagttgactcacagaggtggctcgcaatccaggtgacctgttt 375

                                                                       
Query: 179 caatcactttggctcttggtggactagcactgagtgagctccacagtcaagctagctatg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caatcactttggctcttggtggactagcactgagtgagctccacagtcaagctagctatg 435

                                                                       
Query: 239 cctcgcctaggctggtgatgaaagatgtggagtcagcatgggaggaaactggggggtggg 298
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctcgcctaggctggtgataaaagatgtggagtcagcatgggaggaaactggggggtggg 495

                                                                       
Query: 299 gggctacaactaaacagattccaacaaggagaattctataaaggagggcacctgtaggct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggctacaactaaacagattccaacaaggagaattctataaaggagggcacctgtaggct 555

                                                                       
Query: 359 tcagctcagcccacaaaaggctaccaaccatcctaactgaccacattatgatcaagatga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcagctcagcccacaaaaggctaccaaccatcctaactgaccacattatgatcaagatga 615

                                                                       
Query: 419 ggagaaaagaagacgccaaggcaagtacaat----agtttgcccttatccacagtgtgat 474
           ||||||||||||| |||||||||||||||||    ||||| ||||||||||||| |||||
Sbjct: 616 ggagaaaagaagatgccaaggcaagtacaatcaatagttttcccttatccacagagtgat 675

                                                                       
Query: 475 atgcctgtgtaaaatcccagtaagtacctatgataatatttctaagacgttctaaattta 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atgcctgtgtaaaatcccagtaagtacctatgataatatttctaagacgttctaaattta 735

                                            
Query: 535 attagcagatcctgaaggggtgagaaatgaagt 567
           |||||||||||||||||||||||||||| ||||
Sbjct: 736 attagcagatcctgaaggggtgagaaataaagt 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |