BAC Information

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BAC

Clone NameMSMg01-344P12
Chromosome14 (Build37)
Map Location 37,308,099 - 37,308,251
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344P12.T7 (MSMg01no344_p12.b1)MSMg01-344P12.TJ (MSMg01no344_p12.g1)
ACCAG457904AG457905
length791765
length of high quality
(start - end)
153 (172 - 324)327 (70 - 396)
definitionCHROMAT_FILE: MSMg01no344_p12.b1 PHD_FILE: MSMg01no344_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:19 2005CHROMAT_FILE: MSMg01no344_p12.g1 PHD_FILE: MSMg01no344_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGAGAGGA
TCCGCGGAATTCTCCAAGTTCCTGATATTTNGGGAAGAGGACTCCATGAA
CTGAACCAGTGATCTATGACCACCAGCTGAACCTGCTGACTGGGAAACCC
TGTACACTCTAACGTCCAACTATCCAAACCCACATGGTCTTAGACCAGGT
ATCCATCAAAGGATCATTCTGGCTCTTCCAGTACCTGTAGAATTGTCTTA
AATTCCCCCATTATTCGTTTCTCTATCCTCCCACTCAGTATATTCCCAAC
ATGGCCTCCCAGTACATATGTTAACTTCTTGATTCACAGAATGACACTTT
ATGCTGAAATCCCCAAATGCTGCCAGTTCTTCCCAAATATCACACCCTTG
GAGAATTCTCCAAACATCTATCCTGACCCCTTTCTCCTACTCTTGCTTAC
TCAGCTTCTTATCTTACTCTGTTGTTCTTCATAGTCTATTATATCTGCAA
ACACTATATCCACGCTGCTGGACCTGTTAGTCGTCCAATCTTTCTAGTAT
ACTTTTCTCCTTATGTTAAAACTCACTGAATTTTTGTCTTTCTTCTGTTT
ACATTTATTCTCTGTACGCAACCCGCAATTAAATATGTATATTTCTCATC
TTTATTGTTCATGCTCCATTCTACTCTATATTTTACCATTCTCTCTCCTC
TATTTGTTTATTTTTTTTATGTTTTTCATTCTATTTTCTTCTTTATGTTG
TTATATTTTTCAGTTACTCTCCCCTTACACACAATGACTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAG
GATTATTTGATTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTG
GATATTAGCACTCTATCTGATGTAGGGTTGGTAAAGATCTTTTCCAAATC
TGTTGGTTTTCGTTTTGTCCTATTGACTCTGTCCTTTGCCTTACAGAAGC
TTTGCAATTTTATGAGGTCCCATTTGTCAATTATTCATCTCAGAGCATAA
GTTATTGATTCTGTGTTCAGGAAAATTTCCCCCATGCCCATGTGTTTGAG
GCTCTTCCACTTTTTCGTCTATTAGATTCAGTGCATCTGGTTTTTATGTG
TAGGTCCTTGACCCCCTTGTACTTGAGCTTTGTACTTAGAGATAAGACCG
GATCTATTTGCATTCTTTCTAATTGCTGACTCACTTCCTTTTGTTGATTA
TTGTTTTCTATTTTCACCTTGTATATCTTTCTTTTTCTTTTTCTCCTATA
TCGCGCACTTCACCTACTGTATTTTTAATTTTATGTTTATCCTAATCTCT
CCTCCCAGCATTTTCTTTTTCTATCTCCTTTACTTATTCCTCCGTTCTAT
TTTATCTCTCTTTCTTTTTTCTTGTCTCTATTTTTTTATCTTGTTTTGAT
CCTTCCCCCATATAAATTTCTCTTATTTTACTGGTTTTTTATATTATGTT
CTTTTCTTACATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_p12.b1 MSMg01no344_p12.b1 CHROMAT_FILE:
MSMg01no344_p12.b1 PHD_FILE: MSMg01no344_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:19 2005
         (153 letters)



>mm_chr14_37307899_37308451
          Length = 553

 Score =  288 bits (149), Expect = 9e-83
 Identities = 152/153 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccaaacccacatggtcttagaccaggtatccatcaaaggatcattctggctcttccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atccaaacccacatggtcttagaccaggtatccatcaaaggatcattctggctcttccag 294

                                                                       
Query: 61  tacctgtagaattgtcttaaattcccccattattcgtttctctatcctcccactcagtat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 293 tacctgtagaattgtcttaaattcccccattattcatttctctatcctcccactcagtat 234

                                            
Query: 121 attcccaacatggcctcccagtacatatgttaa 153
           |||||||||||||||||||||||||||||||||
Sbjct: 233 attcccaacatggcctcccagtacatatgttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)