Query= MSMg01no345_k15.b1 MSMg01no345_k15.b1 CHROMAT_FILE:
MSMg01no345_k15.b1 PHD_FILE: MSMg01no345_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:10 2005
(586 letters)
>mm_chr14_115155136_115156121
Length = 986
Score = 1087 bits (562), Expect = 0.0
Identities = 577/582 (99%)
Strand = Plus / Plus
Query: 5 gaattccttggaaatgactaataatggtcaaggccttaatgatgtatccttagtaaataa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttggaaatgattaataatggtcaaggccttaatgatgtatccttagtaaataa 264
Query: 65 aagactggaatcagtctctcagatcagaccgataaagtaatgagagaacacatgagctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagactggaatcagtctctcagatcagaccgataaagtaatgagagaacacatgagctga 324
Query: 125 cagcttgcatccactactgacactgagtcactattgaatcaacactcctcccattttccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcttgcatccactactgacactgagtcactattgaatcaacactcctcccattttccc 384
Query: 185 ctttctcggactcccctcatgttgaggctggacttcagtactgtaggaaaattaaatcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttctcggactcccctcatgttgaggctggacttcagtactgtaggaaaattaaatcat 444
Query: 245 ttataaaatcaaaagtatcctaaatattacttctaatgaagaaaaatatactaaaattat 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ttataaaatcaaaagtatcctaaatattacttctaaggaagaaaaatatactaaaattat 504
Query: 305 ttgaatttttaaaaatacattctaacaaatgatttcagtagcactgaaacattgtaaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgaatttttaaaaatacattctaacaaatgatttcagtagcactgaaacattgtaaaac 564
Query: 365 tgtggtgggacgtttacttcttcctacaatgagctcatttccaaagattctccaaagaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtggtgggacgtttacttcttcctacaatgagctcatttccaaagattctccaaagaga 624
Query: 425 aaagatgatggcagtagcacatccctttagccccaagcttaccctggtcttaatgcataa 484
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgataatggcagtagcacatccctttagccccaagcttaccctggtcttaatgcataa 684
Query: 485 accagtctatgtcaaagagttgggacaaattgctctactttggtgctatatttataaatc 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accagtctatgccaaagagttgggacaaattgctctactttggtgctatatttataaatc 744
Query: 545 taagcatatgagttaacccatgtaagcacactttactgttaa 586
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taagcatatgagttaacccatgtaagcacactttactgttaa 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_k15.g1 MSMg01no345_k15.g1 CHROMAT_FILE:
MSMg01no345_k15.g1 PHD_FILE: MSMg01no345_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:10 2005
(527 letters)
>mm_chr14_115327472_115328399
Length = 928
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%), Gaps = 1/528 (0%)
Strand = Plus / Minus
Query: 1 tttttctattcccactttactacaggactctgacccccctgcaccattccagagcctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tttttctattcccactttactacaggactctgacccccctgcaccattccagagcctggc 669
Query: 61 tcccactttgtgaattgcgggaaaaccaactctatctagagctatgagggcaaagggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tcccactttgtgaattgcgggaaaaccaactctatctagagctatgagggcaaagggctg 609
Query: 121 ggtccatggtttgagaaagtttggaaatgtaaattactaagttgtttaactctacagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggtccatggtttgagaaagtttggaaatgtaaattactaagttgtttaactctacagctt 549
Query: 181 ccataagaaacttccgcaagctggacactattaggcaagaaccatttctcatagaggggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccataagaaacttccgcaagctggacactattaggcaagaaccatttctcatagaggggt 489
Query: 241 ggcagtgaagatgaagagcaagctggcaacctcactttctagaacagtgtgctgatgaac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 488 ggcagtgaagatgaagagcaagctggcaacctcactttctagaacagtgtgccaatgaac 429
Query: 301 ccaagaaagaacaaaaaggatgcttgggaagagttgcagggagaaaagggaagagggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ccaagaaagaacaaaaaggatgcttgggaagagttgcagggagaaaagggaagagggaaa 369
Query: 361 ttttgtaatcataattcaatttctaaattttagaaatgtaaaatcgt-gtttctacaaag 419
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 368 ttttgtaatcataattcaatttctaaattttagaaatgtaaaatcttagtttctacaaag 309
Query: 420 ggcatgatttctgaggctcacagataacttctttgtgaccacatctttggagatgggagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggcatgatttctgaggctcacagataacttctttgtgaccacatctttggagatgggagt 249
Query: 480 ctatcagtgttgttccagtttcactcctgagggcttcggtcttgtcat 527
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctatcagtgttgttccagtttcactcctgagggcttcggtcttgtcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
