BAC Information

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BAC

Clone NameMSMg01-346C03
Chromosome14 (Build37)
Map Location 21,689,162 - 21,689,670
singlet/doubletsinglet
Overlap genenone
Upstream geneGng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119
Downstream geneVcl, Ap3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346C03.T7 (MSMg01no346_c03.b1)MSMg01-346C03.TJ (MSMg01no346_c03.g1)
ACCAG458792AG458793
length721715
length of high quality
(start - end)
235 (42 - 276)584 (72 - 655)
definitionCHROMAT_FILE: MSMg01no346_c03.b1 PHD_FILE: MSMg01no346_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:44 2005CHROMAT_FILE: MSMg01no346_c03.g1 PHD_FILE: MSMg01no346_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGATTATCCGTTTGCCACGTACAGTGAATTTGAGGCCAGCCTGGCTAC
TAGAGACCCTGTTCCACTAACAAAAGATAATTCAGAAGCCGGGCGTGGTG
GCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCT
GAGTTCGAGGCCAGCCAGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC
TACAAAGAGAAACCCTGTCTCGAAAAACCAAAAGAAATAAAAAAAAAAAT
AAGGAAAATTCAGATTATGCTTTTTCCACACAAGATGTCACTGTACCTTT
ATTTAGATTTCCAAATAACTGTGAAGGTTAAAACCACCTAAAGGTTCCCT
TGCTCTCCTCTAGAATACCATTTCCAGGCTCTGGAGCCTTGGTACAGTCT
CCATACTTGAACGAGACAAGCCTGCAATGTCATCTGCTTGGGAGAACTAT
GATGTCTCCATGCTTGTGATCACCTTCCCATCTCTCGGATGAGATTAGTT
TTACTCTTTTTCTTCTTTCTTTCACAGGATATTCCTTGCTCCATCCGACG
CCCAGTTTCTGCCTTATTCCTTCGGCTGTCTGTATTTCACTACAGGTTGT
GGTCCTTGTTGGTTTCCTTGCGTTGCCATATTATTTTTGCTTCCTTATTC
CCTCTCGCACTTTTCCATACN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGACATTTAACCTGTCCACAGCACACTT
AAAGAATCTGAGCAGTTTTGTCGTAGTCAAGAAATCAACCTCACACAACA
TCCCCCGGAGTAACTAGCACAAACCCCTTTGTTCCATGTGCTATTTGTTA
ATATATAACGGAAGCCCTGGGTAGGGTTTGTTGTATGTGAGCAGGAATCT
AAGCAAAACAACTTGAGAGAGCATGTTTCCTTGGCCTCAGAGTTTCCAGC
TCATCACAGGAGCATCGTAGGGCACAAAGACTCACTTCACGATAATCAGA
AGCAGCATACAGAGAGCTTCCTTGTCACCCCTTCTATTCCATTTATGTCT
CCAATGTATAGGATGGTGGCACCCATATGCAGAGCAGGTCTTCCCTGTTT
AGTGAATCCTCTGGAAACACCTTCACAGCTTTCCTTATTTCCTAGTAGTT
TTTTAATCCAATAAAATCGACGATCAAAACTAACCACCACAAGTCCACTC
ATTGTCAGCTTCACATGTAAACATGTCTCCCTAAACCATAGTATTATCCC
TTCTGCCCCCTCCCCAAAATTTACCCTTTATCTGACAAAAAACAAATGTA
TTTAGTCTCTTTTTAAGATTCTCACATAGGGCTGGGCAGCGGCGGCACAC
TCCTTTAATCCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_c03.g1 MSMg01no346_c03.g1 CHROMAT_FILE:
MSMg01no346_c03.g1 PHD_FILE: MSMg01no346_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:44 2005
         (584 letters)



>mm_chr14_21689162_21690147
          Length = 986

 Score =  897 bits (464), Expect = 0.0
 Identities = 498/510 (97%), Gaps = 4/510 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggacatttaacctgtccacagcacacttaaagaatctgagcagttttgtcgtagtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 509 tggacatttaacctgtccacagcacacttaaagaatctgagcagttttgtcatagtcaag 450

                                                                       
Query: 61  aaatcaacctcacacaacatcccccggagtaactagcacaaacccctttgttccatgtgc 120
           ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct: 449 aaatcaacctcacacaacatcccccggagtacctggcacaaatccctttgttccatgtgc 390

                                                                       
Query: 121 tatttgttaatatataacggaagccctgggtagggtttgttgtatgtgagcaggaatcta 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatttgttaatatataacagaagccctgggtagggtttgttgtatgtgagcaggaatcta 330

                                                                       
Query: 181 agcaaaacaactt--gagagagcatgtttccttggcctcagagtttccagctcatcacag 238
           |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 329 agcaaaacaacttgagagagagcatgcttccttggcctcagagtttccagctcatcacag 270

                                                                       
Query: 239 gagcatcgtagggcacaaagactcacttcacgataatcagaagcagcatacagagagctt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagcatcgtagggcacaaagactcacttcacgataatcagaagcagcatacagagagctt 210

                                                                       
Query: 299 ccttgtcaccccttctattccatttatgtctccaatgtataggatggtggcacccatatg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ccttgtcaccccttctattccatttatgtctccaatgtataggatggtggcacccatatg 150

                                                                       
Query: 359 cagagcaggtcttccctgtttagtgaatcctctggaaacaccttcac-agctttccttat 417
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 149 cagagcaggtcttccctgtttagtgaatcctctggaaacaccttcacga-ctttccttat 91

                                                                       
Query: 418 ttcctagtagttttttaatccaataaaatcgacgatcaaaactaaccaccacaagtccac 477
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 90  ttcctagtagttttttaatccaataaaattgacgatcaaaactgaccaccacaagtccac 31

                                         
Query: 478 tcattgtcagcttcacatgtaaacatgtct 507
           ||||||||||||||||||||||||||||||
Sbjct: 30  tcattgtcagcttcacatgtaaacatgtct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 986
Length adjustment: 10
Effective length of query: 574
Effective length of database: 976
Effective search space:   560224
Effective search space used:   560224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)