BAC Information

Click to search

BAC

Clone NameMSMg01-346E12
Chromosome14 (Build37)
Map Location 27,133,574 - 27,304,349
singlet/doubletdoublet
Overlap geneLOC100039538, 4933413J09Rik, Slmap
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527
Downstream geneLOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346E12.T7 (MSMg01no346_e12.b1)MSMg01-346E12.TJ (MSMg01no346_e12.g1)
ACCAG458905AG458906
length754740
length of high quality
(start - end)
423 (58 - 480)504 (67 - 570)
definitionCHROMAT_FILE: MSMg01no346_e12.b1 PHD_FILE: MSMg01no346_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:56 2005CHROMAT_FILE: MSMg01no346_e12.g1 PHD_FILE: MSMg01no346_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,303,927 - 27,304,349)(27,133,574 - 27,134,087)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
ATCTCGTGAGCAGGTCATTATTAGAAGTTTGAAGTGACTGTAAGTTTGTA
CTAGCTATGTATATCATTTCCAGGCATAAATACTAAAAAGTTAAACCAGA
ATCCATTTGTTGTTACATTTCCTAATGATATATTAAAAGTATTCCCCTCC
ATTTCTTTATACAGTAAGTTCTAATGCTAAAAGAGGTTTTGTGAATAACT
GTTCTTTCCTGATAGGGCTGCCTGTTCTTGTCTTTCTGGTGTTAAGGGAT
GTAAATTTTGTATAGATTTGTAAAATATCAACAGAATTTAATGACCTGTA
ATTAAATGTATGAATTGCTAGACAAAGTCAGCAGTTGTTTTGTGTTGAAA
TTTTAAACAATAAATCATTTACAGATAGTATAGTAGCCTTTAAATTGTTA
CCTGGGAATAAATGAAATGAACTGTCATTTTTAGCAAATTATTGATGTGA
TTAATTTTGAAGAGTGCTTGACAGATGAATGAAGGATAATGAAACCTGAA
AGTTAAATTCTCCTGAATTTAATGAAGCCTTGTCCGTGGGTGTTACCCCC
GGGGCCCTTTGAAAAAAAAATTAACTTGTTTAAACATCATATTTCTTATT
AAATAACGAATCTAAATTTGGGATGCGCAAAGGCCCCTTTTTATTTTTCC
GTTCTGCTCCCCTATTTTTTTTACCCTCCGTCGGGAATATTTTTCGTCGT
GCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGTAGAGGCATTTGTCCCTCCCCTGATTGGCTA
AGAGAAAAGTGTCACCCTTGTCATACAGGCAGAGCAATGGCCTTAATAAG
ATTCTAGCTCTGATTAGTGAGGGGCTGAGAGAAGGTTGGCTGGAGGGGCC
GAGCAGGAGTACCATTCACTCGCGCCCTCTGCGGACAGTGGCAGTAGAGA
GTGAGCAGCAGGTGAGGCTGCATCTTCATCAGTGACAGCTCAGGTCCTGT
TCCCTGGCCAGAAGCTGGAGCAGCAGCTCTGCCTTGGCGCTTCCTGCCTC
ATCCAGTAGCTGTTGCCCCAGGCTCAGTGCCTTCAGGGCCACGACCTAGG
TTTTATGCTGAGGTTCCATAATGGCTAGCCTGCCCCATCCCACCTAGCTT
TGTGGGATAATCGCCAAAACTCTCTGAGACATCCTGCATACCGAGCTTGG
CAGCAGCCTAGGACACTGTAGTCAAGAGGTGGCAGGGCTCACAATGAGAG
CAACAGAGGGAGATATTCTAGTTTATATGAGGAATGAGAAACCTGATGCT
CTGCTTCTGTGGACGAAACCTAGCAGCCCCTCCACATGAAAATAAAGGAC
ATTTGTGGAAGNTTGTTTTCTCCTTCCGGCCGCGAATCCCCGGGAAAAAT
CTCGTTTGTAGTCCGGCAGCAATTTCCCAACCGGTGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_e12.b1 MSMg01no346_e12.b1 CHROMAT_FILE:
MSMg01no346_e12.b1 PHD_FILE: MSMg01no346_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:56 2005
         (423 letters)



>mm_chr14_27303727_27304549
          Length = 823

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcaggtcattattagaagtttgaagtgactgtaagtttgtactagctatgtatatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 623 gagcaggtcattattagaagtttgaagtgactgtaagtttgtactagctatgtatgtcat 564

                                                                       
Query: 61  ttccaggcataaatactaaaaagttaaaccagaatccatttgttgttacatttcctaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttccaggcataaatactaaaaagttaaaccagaatccatttgttgttacatttcctaatg 504

                                                                       
Query: 121 atatattaaaagtattcccctccatttctttatacagtaagttctaatgctaaaagaggt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 atatattaaaagtattcccctccatttctttatacaataagttctaatgctaaaagaggt 444

                                                                       
Query: 181 tttgtgaataactgttctttcctgatagggctgcctgttcttgtctttctggtgttaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttgtgaataactgttctttcctgatagggctgcctgttcttgtctttctggtgttaagg 384

                                                                       
Query: 241 gatgtaaattttgtatagatttgtaaaatatcaacagaatttaatgacctgtaattaaat 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatgtaaattttggatagatttgtaaaatatcaacagaatttaatgacctgtaattaaat 324

                                                                       
Query: 301 gtatgaattgctagacaaagtcagcagttgttttgtgttgaaattttaaacaataaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtatgaattgctagacaaagtcagcagttgttttgtgttgaaattttaaacaataaatca 264

                                                                       
Query: 361 tttacagatagtatagtagcctttaaattgttacctgggaataaatgaaatgaactgtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttacagatagtatagtagcctttaaattgttacctgggaataaatgaaatgaactgtca 204

              
Query: 421 ttt 423
           |||
Sbjct: 203 ttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no346_e12.g1 MSMg01no346_e12.g1 CHROMAT_FILE:
MSMg01no346_e12.g1 PHD_FILE: MSMg01no346_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:56 2005
         (504 letters)



>mm_chr14_27133382_27134287
          Length = 906

 Score =  853 bits (441), Expect = 0.0
 Identities = 493/515 (95%), Gaps = 12/515 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtagaggcatttgtccctcccctgattggctaagagaaaagtgtcacccttgtcatac 60
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 193 aagtagaggcatttgtccctcccctgattggctaggagaaaagtgtcatccttgtcatac 252

                                                                       
Query: 61  aggcagagcaatggccttaataagattctagctctgattagtgaggggctgagagaaggt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 253 aggcagagcaatggccttaataagattctagccctgattagtgaggggctgagagaaggg 312

                                                                       
Query: 121 tggctggaggggccgagcaggagtaccattcactcgcgccctctgc------g-gacagt 173
           |||||| |||||||||||||||||||||||||||||||||||||||      | ||||||
Sbjct: 313 tggctgtaggggccgagcaggagtaccattcactcgcgccctctgcccctctgcgacagt 372

                                                                       
Query: 174 ggcagtagagagtgagcagcaggtgaggctgcatcttcatcagtgacagctcaggtcctg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcagtagagagtgagcagcaggtgaggctgcatcttcatcagtgacagctcaggtcctg 432

                                                                       
Query: 234 ttccctggccagaagctggagcagcagctctgccttggcgcttcctgcctc---atccag 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 433 ttccctggccagaagctggagcagcagctctgccttggcgcttcctgcctcctcatccag 492

                                                                       
Query: 291 tagctgttgccccaggctcagtgccttcagggccacgacctaggttttatgctgaggttc 350
           ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 493 tagctgttgccccaggctcagtgccctcggggccacgacctaggtttcatgctgaggttc 552

                                                                       
Query: 351 cataatggctagcctgccccatcccacctagctt-tgtgggataatcgccaaaactctct 409
           ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 553 cataatggctagcctgccccatcccacctag-ttctgtgggataatagccaaaactctct 611

                                                                       
Query: 410 gagacatcctgcataccgagcttggcagcagcctaggacactgtagtcaagaggtggcag 469
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gagacatcctgcatactgagcttggcagcagcctaggacactgtagtcaagaggtggcag 671

                                              
Query: 470 ggctcacaatgagagcaacagagggagatattcta 504
           |||||||||||||||||||||||||||||||||||
Sbjct: 672 ggctcacaatgagagcaacagagggagatattcta 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 906
Length adjustment: 10
Effective length of query: 494
Effective length of database: 896
Effective search space:   442624
Effective search space used:   442624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)