BAC Information

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BAC

Clone NameMSMg01-346I02
Chromosome14 (Build37)
Map Location 73,651,087 - 73,651,323
singlet/doubletsinglet
Overlap geneRb1
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, P2ry5
Downstream geneItm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346I02.T7 (MSMg01no346_i02.b1)MSMg01-346I02.TJ (MSMg01no346_i02.g1)
ACCAG459074AG459075
length623728
length of high quality
(start - end)
241 (51 - 291)435 (69 - 503)
definitionCHROMAT_FILE: MSMg01no346_i02.b1 PHD_FILE: MSMg01no346_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:13 2005CHROMAT_FILE: MSMg01no346_i02.g1 PHD_FILE: MSMg01no346_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGAGAGACC
GCGGAATTCTAGGGTTTACAGCTATATAGTGAGACCTCCATCCCTTAAAA
AAAAAAAAAAAAAAGACAGAAAATGTAAAAAGAAGTTGCCTTTAGCTTGC
TCTTCTGAATCACTAATTAAATCACTCATGAACATGTCCTTCATACCCTA
AGGCTCGAAGCATAACTGTGTGATATCATATTCTTCCATGGTAAGGGCTA
TTTTCTCAGTAGTGCATTTCACACTTTAATGTACACAGGAATCATCTAGA
GATCTTTGAAAATGCACATTCTTTCTCAGGTGTGTCTGGGTGGTACAGCC
TTTTTTAAAATACACTTTTTTATTGAGGAATTTTTTACAACGTATTTTTT
AACCAAATTTTTACTTCCTATTCCCCAACACTACTCTCGGGTTGGTTAAT
TTCCTAAAAAACATTTCCGGGGTTTTTTTTGAAAAAAAGGGCTTCTTCTC
CTTTGTTTAACCCCCCGTGGCTGGCCCCTGGAATAATTCAAACTCCCGGC
TCCCAAATAATAAATAATACCTTTCCTTAAATATTATTAAAGAAACCATG
GGGTTCTTGTGTCTTTTCGCGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAATGGTGGTAATGA
AGTGTTCCCGTAACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCA
GAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGT
AAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGT
AAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACG
AAATTCAAGGCAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGT
ATGTTTGGCCTTGAACTTTTTCCAGTGTTAGGAGCCTTTTTGTTCCTTTT
CACATGTTATCAAGTGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTC
AGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGG
AAATATGGCGCACAAAATAAGTATACAGGCTCTTTCCAAGGGTTTTTGAA
CCTTGAGGATAAGTTTAGGTTCTGGTAACTAATATCCTGGCGGAGAGATT
ACAAGGTATGGAAATTTCAACATGATCACTTTAAGGGGAGTCTTTCCAAC
GTAAAGGAGTCTCTATCTCTTTTTTTTCAGGTGGTTTCTTGGTTCCTTTC
CCCCCATTATTATCCCGAACCTCCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_i02.b1 MSMg01no346_i02.b1 CHROMAT_FILE:
MSMg01no346_i02.b1 PHD_FILE: MSMg01no346_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:13 2005
         (241 letters)



>mm_chr14_73650821_73651461
          Length = 641

 Score =  391 bits (202), Expect = e-113
 Identities = 229/238 (96%), Gaps = 1/238 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctagggtttacagctatatagtgagacctccatcccttaaaaaaaaaaaaaaaaa 63
           |||||||||||   |||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 503 gaattctagggcagacagctatatagtgagacctccatccctt-taaaaaaaaaaaaaaa 445

                                                                       
Query: 64  agacagaaaatgtaaaaagaagttgcctttagcttgctcttctgaatcactaattaaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agacagaaaatgtaaaaagaagttgcctttagcttgctcttctgaatcactaattaaatc 385

                                                                       
Query: 124 actcatgaacatgtccttcataccctaaggctcgaagcataactgtgtgatatcatattc 183
           ||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 384 actaatgtacatgtccttcatactctaaggctcgaagcataactgtgtgatagcatattc 325

                                                                     
Query: 184 ttccatggtaagggctattttctcagtagtgcatttcacactttaatgtacacaggaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttccatggtaagggctattttctcagtagtgcatttcacactttaatgtacacaggaa 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)