BAC Information

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BAC

Clone NameMSMg01-346M09
Chromosome14 (Build37)
Map Location 76,710,533 - 76,710,925
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
Downstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346M09.T7 (MSMg01no346_m09.b1)MSMg01-346M09.TJ (MSMg01no346_m09.g1)
ACCAG459279AG459280
length746733
length of high quality
(start - end)
395 (60 - 454)403 (69 - 471)
definitionCHROMAT_FILE: MSMg01no346_m09.b1 PHD_FILE: MSMg01no346_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:33 2005CHROMAT_FILE: MSMg01no346_m09.g1 PHD_FILE: MSMg01no346_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAG
ATTGCGGCACATCTCCATGAGTTCAAGCCTAGCCTGTTCTACATAGTAAG
CTCTAGGCTAGCCAGAGCTATATAGTAAGACCTGAAGACTATATCTCAAA
AACAAAACAAATAAAAAAAAAAAAACCCAGGATCTCAATATAGGTTTTTA
GAAATTCAGCTGCCGCCATGTATGTGAGACCCAGGTAAGCTTACATCTCA
GGGTACTCAGGCACATGTCTACTATCTATAGTTTCTTTCTGTATTCAGAG
ATTTAAGGCTTAATTACTGACATCTTTTAAAGACCCCAGTTGTTCCCGGT
TGTAAGAATGGCTGCCTAAGTGGGGGAAATGAGGGTCAGGTGGAAAGGGA
GTGATGACGTAATCACTCAACTTCAGGACACCTACGTAACTTACCCACCT
GCTGGTAGGGCCCAGCTGGGCCTACCCAGGTTTAGCTCTATCACACAGTG
AGACCTTTGTCTCTCACTGGTTTTTAGGAGTTAGTCTTGTGTCCCCAAGT
CTAGCTGTGGTTGTGTCCAATTAAAACTCTTTGGCTATTATCTGTCTTGC
TTTAGGAAACCCTGTTTGATTTCCGGTAACCCATTCCTTGGATAAAGAAC
TGGTCCACTGGCTCTTTCTCAACTTTGTGTATTCCGTTCCCCTGCTCACC
CATTTATCTCTCTCTTTATATCCCTTATCTGTTTGTATATCTGTAG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACTTCTATGTCTAGAATTGACCTCTTCGATA
CACAAGTATCCAGGGGCAAAGATACAGCTTTGCAAAGGAACACTATGGCC
TTTCTAGCTACTATAAGAAAATATTGACAAATGGGACTTAAGGAAGGAGA
AGGTTCCTCCAGCCCTCTGCTCCAGGGTGTAGTCCAGTGGGTCCCAACCT
TCCCAACACTGTGATCCATTAATACAGTTCTTCAAGTTGTGGCGACCCCC
AACCACAAAATTATTTTGCTGCTACTTTTTTTTTTTAAAGAGTAATTTAT
TTTATGTATGTGAGTACATTGTCACTATCTTCAGACATACCAGAAGAGGG
CATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTAGCTGGGAA
TTGAACTCAGGATCTCTGGAAGAGCAGACAATACTCTTAACCACTGAGTC
ATCTCTCCAGCCCATTTTGCTGTCACTTTCCTGCTGCAATTTTTGCTACT
GTTATGGGTTGTAACGCAAATATCTCACCTGTTGGTTATCTTACGCGTCC
CCCCCAAGGGGGTTTCCATCCCATGGTTGAGAATTTCTGGTGAATCTCGC
CTCATTTATGCAGACAAAGATATGTACACCCGCGATTTTACTTTCGCCCT
TTCTCCCTACCCATTTGTTTTGTTTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_m09.b1 MSMg01no346_m09.b1 CHROMAT_FILE:
MSMg01no346_m09.b1 PHD_FILE: MSMg01no346_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:33 2005
         (395 letters)



>mm_chr14_76710228_76711022
          Length = 795

 Score =  721 bits (373), Expect = 0.0
 Identities = 389/395 (98%), Gaps = 2/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctccatgagttcaagcctagcctgttctacatagtaagctctaggctagccagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 catctccatgagttcaagcctagcctgttctacatagtaagctctaggctagccagagct 639

                                                                       
Query: 61  atatagtaagacctgaagactatatctcaaaaacaaaacaaataaaaaaaaaaaaaccca 120
           ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||
Sbjct: 638 atatagtaagacctgaagactatatcttaaaaacaaaacaaat--aaaaaaaaaaaccca 581

                                                                       
Query: 121 ggatctcaatataggtttttagaaattcagctgccgccatgtatgtgagacccaggtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggatctcaatataggtttttagaaattcagctgccgccatgtatgtgagacccaggtaag 521

                                                                       
Query: 181 cttacatctcagggtactcaggcacatgtctactatctatagtttctttctgtattcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cttacatctcagggtactcaggcacatgtctactatctatagtttctttctgtattcaga 461

                                                                       
Query: 241 gatttaaggcttaattactgacatcttttaaagaccccagttgttcccggttgtaagaat 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatttaaggcagaattactgacatcttttaaagaccccagttgttcccggttgtaagaat 401

                                                                       
Query: 301 ggctgcctaagtgggggaaatgagggtcaggtggaaagggagtgatgacgtaatcactca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggctgcctaagtgggggaaatgagggtcaggtggaaagggagtgatgacgtaatcactca 341

                                              
Query: 361 acttcaggacacctacgtaacttacccacctgctg 395
           ||||||||||||||| |||||||||||||||||||
Sbjct: 340 acttcaggacacctatgtaacttacccacctgctg 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)