BAC Information

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BAC

Clone NameMSMg01-346P10
Chromosome14 (Build37)
Map Location 46,961,486 - 46,961,935
singlet/doubletsinglet
Overlap genenone
Upstream genePsmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
Downstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346P10.T7 (MSMg01no346_p10.b1)MSMg01-346P10.TJ (MSMg01no346_p10.g1)
ACCAG459424AG459425
length731727
length of high quality
(start - end)
351 (39 - 389)450 (68 - 517)
definitionCHROMAT_FILE: MSMg01no346_p10.b1 PHD_FILE: MSMg01no346_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:47 2005CHROMAT_FILE: MSMg01no346_p10.g1 PHD_FILE: MSMg01no346_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAA
CATAAAAGTAAATGGGGAGAAGCTGGAAGCAATCCCACTAAAATCAGAGA
CTAGACAAGGCTGTCCACTTTCTCCCTATCTATTCAACATTGTACTTGAA
GTCCTTGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAAT
TTGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT
ATATAAGTGACCCTAAAAATTTCACCAGAGAACTCCTAAACCTGATAAAC
AGCTTCGATGAAGTAGCTGGATATAAAATCAACTCAAACAAGTCAATGGT
CTTTCTGCACACAAAGAACATACAGGCCGATAAAGAAATTACGGACACAA
TACCCTTCTCAATAGTCACAAATAATATAAAACCACCTTGGTGTGACTCT
AACTAAGGAAGTGAAAGATATGTATGACAAGAACTTCAAGTCTCTGAATA
ATGAATTCATAGAAGATCTCCTAAGATGGAAAGATCTCCCATGCTCATGG
ATTGTTTGTTATCCACATTGTCCAAACGGCTACCTTGTCATAAGTAACCT
ACCCATTCCTATGCATCTCTACTCATTTTCCTACTCATTTCTCTTTTTAA
CTCCATTGGCCCTTTTGGCAGATTCCCTTCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCCTAGTGATCAAGCAGCATAGAGAGCCAGGG
AAGTCCTGGGTCAATGTATGTGGGTGACATAAGCAAATCCATCATCAGGT
CTGAATATGAATATTGACAGAGTGTGTGCAGAAAATGGAAAATGCCCACC
GTGCCTTCCTTCCCCAACTACCACCATGTTTATAGCTTGAAGACTACTCC
CCTACAGAAACTGCCTCTACCAAACTAAACCTGCCTCCTTGTTTACCTGT
TTGGAATAACCTACTTCCTCATTCAGTTACATCTAATAACCCCGATTCCC
CATTTGACTGTACATAATAAATACTCTCAGCTTCCAGGGCCCTGCGGCTT
CACCATCTGAGAGCCCAAACCACCCAACCCCAGCTTTTCTGTGTTTGTGT
GTCTGTCTGCCCTTTCTTCCTTCCCTTGATGCCTTGGTTAGGTCAGTCCC
TGGCGTCATGCAAGGATTTAGAAAGGTAGGTAAGGTCACATGCCTGTTAA
GAACAGACACCATAAAATGCATGTGTATAGAGGTGTTGTTTCATATAACC
ATTAATATATTTGTTCAACAAGATATTATCACATATTACAGATACGTAAC
TTTAAATGCCCGATTATCTAGACTTCTATTATCTGTATCCTGTAGCTAGT
ATTGAGCTTTCCCTTAGCCCGACTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_p10.g1 MSMg01no346_p10.g1 CHROMAT_FILE:
MSMg01no346_p10.g1 PHD_FILE: MSMg01no346_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:47 2005
         (450 letters)



>mm_chr14_46961286_46962135
          Length = 850

 Score =  870 bits (450), Expect = 0.0
 Identities = 450/450 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctagtgatcaagcagcatagagagccagggaagtcctgggtcaatgtatgtgggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctagtgatcaagcagcatagagagccagggaagtcctgggtcaatgtatgtgggtga 260

                                                                       
Query: 61  cataagcaaatccatcatcaggtctgaatatgaatattgacagagtgtgtgcagaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataagcaaatccatcatcaggtctgaatatgaatattgacagagtgtgtgcagaaaatg 320

                                                                       
Query: 121 gaaaatgcccaccgtgccttccttccccaactaccaccatgtttatagcttgaagactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaatgcccaccgtgccttccttccccaactaccaccatgtttatagcttgaagactac 380

                                                                       
Query: 181 tcccctacagaaactgcctctaccaaactaaacctgcctccttgtttacctgtttggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccctacagaaactgcctctaccaaactaaacctgcctccttgtttacctgtttggaat 440

                                                                       
Query: 241 aacctacttcctcattcagttacatctaataaccccgattccccatttgactgtacataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctacttcctcattcagttacatctaataaccccgattccccatttgactgtacataa 500

                                                                       
Query: 301 taaatactctcagcttccagggccctgcggcttcaccatctgagagcccaaaccacccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatactctcagcttccagggccctgcggcttcaccatctgagagcccaaaccacccaa 560

                                                                       
Query: 361 ccccagcttttctgtgtttgtgtgtctgtctgccctttcttccttcccttgatgccttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccagcttttctgtgtttgtgtgtctgtctgccctttcttccttcccttgatgccttgg 620

                                         
Query: 421 ttaggtcagtccctggcgtcatgcaaggat 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 ttaggtcagtccctggcgtcatgcaaggat 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)