BAC Information

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BAC

Clone NameMSMg01-346P12
Chromosome14 (Build37)
Map Location 41,197,166 - 41,197,476
singlet/doubletsinglet
Overlap geneLOC100040470
Upstream geneNrg3, LOC100040439, LOC218945
Downstream geneLOC382876, Sh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346P12.T7 (MSMg01no346_p12.b1)MSMg01-346P12.TJ (MSMg01no346_p12.g1)
ACCAG459428AG459429
length733749
length of high quality
(start - end)
311 (62 - 372)39 (68 - 106)
definitionCHROMAT_FILE: MSMg01no346_p12.b1 PHD_FILE: MSMg01no346_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:47 2005CHROMAT_FILE: MSMg01no346_p12.g1 PHD_FILE: MSMg01no346_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAA
TAGCTGAAATAGTTAGTTCCATTTCAACTTTAGATGCTCATGTTGAAAAT
CAGTCCATAGGCTACTCTCACCTTGGCTGTAAATGAGAGGATCTTATGAG
CTTTCCTCAGATAACATCACCTGCTAGAACAGTTCACCAAAATTAGAGTC
ACATTTGCTATGTTTGGCACATTATCAGAAAGGTTACAGTAAAGGAAACA
GACATAAAGTATATATGCAGGGGTCTGTATGGGCCTTGGGTGTAAGAGAT
CTGTCTCTGTAAAACTGAGGTCCTTCCAGTCTCTGAGTATGTTTTTGCTA
ATCAAGAAGCTCTCTAACCAGTTTTGGCGCACGCTTATAGCGACCTTATC
CTTTGACACAGTTCACTGCTAACTAATACTCTAATTACCTCCCTCCCCAT
GAATGTGAGATTGAAAGTTTGAACTCTTCAAACTTTGAGCTGATCTTTTT
TGCGACAAGTCCTTTCTCAAGAAGCCTGTCAAGCATTGACCCATCACTTC
CCACTACCTTAGGACGTGTTCTTTGATTTGAAGCTCTCTATTGGGAACCG
CCATCTAATATTATATGTACCCTTTCTAGTACCCCCTACATCTATCCCCA
CCCGACCTTACACATGTGTTCCCTTTTTCCTGCCCCTTTTTTATTTTTAT
CCCCTTTTTCCCCGTTTCCCCTTTCCCGCATCT
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAATATTATTTAAATTAGGCATGTCCTTATAT
TATTGGTTTAAAGAATTGATTCCTTTTTATTTCTTTTTTTTTACACAATG
GATTTTAATGTAATGCTACAGAATTTGAACTTCTTATATTTCAGATTCTA
TGTTAAAATTAACTTTAACATTTTTTGCATTCCTTGCTACATTAAAAGAA
TAATGACGCTGCCTTGGCAGGCTGGCCTCAGTCTCAGCTCCAGCGGTCAC
CATCTGGTTTTCTTTACTCCGCGGTATCTAGGAAATTAGTCTGAATAGGC
TAGAGTTCGCACTATATAACCGGATAGCTTCTGTTACCTTCGCATTTTCA
CAGTCTCCCGATTTTCACTTTTGTCGTTTCTCATACTATCCGTCACTTTC
CGGATCTTATTACTTTTGTTTCCCTGCCTTGTGATCCTATCTCTCTCCTA
ACTATATTCTCCCTTCTCCCGTTCTTTGCTATTTTCCTTTAAATTACCCC
CTTTCCCTTTTTCGCTTTTCATCCCCTTTTTTTACACTTTTTTTTTTTTC
CGCCCTTTCCCTCATCTCTCTTTATTTCCCTATACCTCTACCTCCTTCCC
TTCCCTTCCTTTTTCCCCTTCTTCTTCTTCACTCTCCTTTTTTTCCCCCT
CTCTCTTTTTATACCCCTTTCACCCTTTCATTTTTTACCCTCTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_p12.b1 MSMg01no346_p12.b1 CHROMAT_FILE:
MSMg01no346_p12.b1 PHD_FILE: MSMg01no346_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:47 2005
         (311 letters)



>mm_chr14_41196966_41197676
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttagttccatttcaactttagatgctcatgttgaaaatcagtccataggctactctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gttagttccatttcaactttagatgctcatgttgaaaatcagtccataggctactctcac 452

                                                                       
Query: 61  cttggctgtaaatgagaggatcttatgagctttcctcagataacatcacctgctagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttggctgtaaatgagaggatcttatgagctttcctcagataacatcacctgctagaaca 392

                                                                       
Query: 121 gttcaccaaaattagagtcacatttgctatgtttggcacattatcagaaaggttacagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gttcaccaaaattagagtcacatttgctatgtttggcacattatcagaaaggttacagta 332

                                                                       
Query: 181 aaggaaacagacataaagtatatatgcaggggtctgtatgggccttgggtgtaagagatc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 331 aaggaaacagacataaagtatatatgcaggggtctgtatggaccttgggtgtaagagatc 272

                                                                       
Query: 241 tgtctctgtaaaactgaggtccttccagtctctgagtatgtttttgctaatcaagaagct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 271 tgtctctgtaaaactgaggtccttccagtctctgagtatgtttttgctaatcaagaagtt 212

                      
Query: 301 ctctaaccagt 311
           |||||||||||
Sbjct: 211 ctctaaccagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)