BAC Information

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BAC

Clone NameMSMg01-348D23
Chromosome14 (Build37)
Map Location 100,001,613 - 100,224,501
singlet/doubletdoublet
Overlap geneLOC668672
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348D23.T7 (MSMg01no348_d23.b1)MSMg01-348D23.TJ (MSMg01no348_d23.g1)
ACCAG460391AG460392
length750791
length of high quality
(start - end)		439 (38 - 476)224 (70 - 293)
definitionCHROMAT_FILE: MSMg01no348_d23.b1 PHD_FILE: MSMg01no348_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:29 2005CHROMAT_FILE: MSMg01no348_d23.g1 PHD_FILE: MSMg01no348_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,224,160 - 100,224,501)(100,001,613 - 100,001,836)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAC
CTCCTCTATTCCGCCCCAGTGCTCTCTACTAAAAGCCTTACTTATTTTCT
TCCTTAAGTCTGTGGGATTATGAAGTAATGTCCCTGTCATAGTTTAGCAG
TCAATGCACGCATACCTACAGTGATCAGTAAGAGGAACTTCAACCGAAGA
ATTGCCTGGATCAGACTGGCTGGGGGACATACATATGAGCCATTTTCCTG
ATTTCTTATTGATATAGGAGGGTCCAGACCACTGTGGGTAGGACCATCCT
TACGCAGATGAACTGGAACTATTCAAGGACTGAAACTGAGTGTGAATCAG
AGAGTAAGCTAGTAAGCAGCATCCCTCCGTGGACCCTGCTTCCATTCCTG
CCTCCAGTTATGTGCTTTGGGCTCCTGTCCTGACTTCTTTCCGTGATGGG
TGACCTTGAAGTTCAGGGTGACCTTGAAGTGCAGGAAAGGGAAAATCATC
CCTTCCCTCGGCGAATTGCTTGGGGTGTTGTCATGGTGCTTATCCCACCC
ACCGCCCCAAATGAGATTTTATAAAAAACTCTTTAAAACAAATTTTTGTT
TGTTTTTGCTCAAATTGTTCCCTTGGTGTAGCCCTCTTTCCGTTAATATT
TTTTATAAACCCCACATGGGCATAAAATCTCTTCTTTTGTCCTTCACCTC
TATAATATTTACCACACACGCCATCCCCCCTTTCCCCCCTTCTCTTCCCC


AAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGCTACCACTTATACTGACCAAGCTGTTTA
TGAAGGACTTTTTTTTCCCTAAAGAAAAAAGGAAGATGGAAGGTTGCTAC
TGTCATTTGCTGTCTCAGTGTGACTGTTGTGGATTCATTGGCCTATTTTT
TTTTTTTTTCATTTGAGTCCTGTAGATCAAGAGAGTAGTAGACTGTGCTG
GGTAAGGGGCGGGGGTGGGAGTAAGAAGAAATGGGGAGTTAGGCAGTANC
CTCCCCAATTTGCCCTGCTTTCTTTTGCCACAGTTAGTATCATTAGGTCA
TATGATTACTTCTCCAGATTTACCCCCAGGCGAACGACCTATACTTTTCC
CCTGCCCTACCCTATCTGTTAATTTTGTTTCCGCCCTTTTTTTCCTCCAT
GTTTTTTTTTTCTCGCACTTTCCTCCCCCCTCCCCGTTTTTTACTTTTTT
TTGCCTTGTTACTGTCTTTCCCTCTTTTTTCCTCTCCCTTATCCTCCCTC
TCTCTTCACATATTCACTTTCTTTTTTCCTACCCTTTCCTTTCTTTTCAT
TTTTCTCACCATCGCTCTCCACTCCCTTTTTTTTTTTTTCTTTTTCCCCC
CCCCTCTTTCTCTCTTATATCTCCCCTTCCTCTTCCCCTTTACTCTCCCA
TCTTAATCCCCCCCTCCTTATTTGCTCTAACACCCCATTTCCCCCCTCTA
TTTCCTTTTTTCCCCTTCTCTTCTTCCTCCCTCCCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_d23.b1 MSMg01no348_d23.b1 CHROMAT_FILE:
MSMg01no348_d23.b1 PHD_FILE: MSMg01no348_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:29 2005
         (439 letters)



>mm_chr14_100224160_100224998
          Length = 839

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacctcctctattccgccccagtgctctctactaaaagccttacttattttctt 64
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 342 gaattctacctcctcaattccgccctagtgctctctactaaaagccttacttattttctt 283

                                                                       
Query: 65  ccttaagtctgtgggattatgaagtaatgtccctgtcatagtttagcagtcaatgcacgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccttaagtctgtgggattatgaagtaatgtccctgtcatagtttagcagtcaatgcacgc 223

                                                                       
Query: 125 atacctacagtgatcagtaagaggaacttcaaccgaagaattgcctggatcagactggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atacctacagtgatcagtaagaggaacttcaaccgaagaattgcctggatcagactggct 163

                                                                       
Query: 185 gggggacatacatatgagccattttcctgatttcttattgatataggagggtccagacca 244
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cggggacatacatgtgagccattttcctgatttcttattgatataggagggtccagacca 103

                                                                       
Query: 245 ctgtgggtaggaccatccttacgcagatgaactggaactattcaaggactgaaactgagt 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 102 ctgtgggtaggaccatccttacgcagatgaactggaactatgcaaggactgaaactgagt 43

                                                     
Query: 305 gtgaatcagagagtaagctagtaagcagcatccctccgtgga 346
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  gtgaatcagagagtaagctagtaagcagcatccctccgtgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_d23.g1 MSMg01no348_d23.g1 CHROMAT_FILE:
MSMg01no348_d23.g1 PHD_FILE: MSMg01no348_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:29 2005
         (224 letters)



>mm_chr14_100001413_100002036
          Length = 624

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctaccacttatactgaccaagctgtttatgaaggacttttttttccctaaagaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctaccacttatactgaccaagctgtttatgaaggacttttttttccctaaagaaaaa 260

                                                                       
Query: 61  aggaagatggaaggttgctactgtcatttgctgtctcagtgtgactgttgtggattcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagatggaaggttgctactgtcatttgctgtctcagtgtgactgttgtggattcatt 320

                                                                       
Query: 121 ggcctattttttttttttttcatttgagtcctgtagatcaagagagtagtagactgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcctattttttttttttttcatttgagtcctgtagatcaagagagtagtagactgtgct 380

                                                       
Query: 181 gggtaaggggcgggggtgggagtaagaagaaatggggagttagg 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtaaggggcgggggtgggagtaagaagaaatggggagttagg 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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