BAC Information

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BAC

Clone NameMSMg01-349D10
Chromosome14 (Build37)
Map Location 90,966,990 - 91,143,592
singlet/doubletdoublet
Overlap genenone
Upstream geneEG328451, LOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349D10.T7 (MSMg01no349_d10.b1)MSMg01-349D10.TJ (MSMg01no349_d10.g1)
ACCAG461124AG461125
length743765
length of high quality
(start - end)		449 (65 - 513)500 (77 - 576)
definitionCHROMAT_FILE: MSMg01no349_d10.b1 PHD_FILE: MSMg01no349_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:45 2005CHROMAT_FILE: MSMg01no349_d10.g1 PHD_FILE: MSMg01no349_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,966,990 - 90,967,438)(91,143,093 - 91,143,592)
sequence
TTGTTTCCGTTATACGACTCATATTTCCAGAGGATCCGCGGAATTCTTGG
AAGTTACGGGAAGGATGCTGAAACATTACTCGCCACACTCGATGGCTTTT
GGCTGGGGTGCAGGTAGTCAAGCACTCAGTTTTATTTAAAAGTCTGGCCA
ATGGGAGTTTGATCATGCTCCAGTGAGTATATGGGAAACACAAACTGGAA
TTTTCTTTTTTTAGTATCTGTTTCGTGCGGAAACATTACAAGTAGGGCAG
ACCCGGAACAGGAATTGAATGTGATCATTGTTCATGATGTCAATTTCTCA
AATAATCAATAAAAATATTATTTTGGAAGAAAAATAAAAGACCTTGGAAG
TCTAGAAAATATAATGAAGCATAAAAAAGGTTATTGACAGAGCTTATGAC
AATTGGCTCTCAATAAACGTGACTTCTAATCTTTCATTAACTATTATATT
CCAACTGATGATCTTATAATTTCCATACATGAAATAAAAAGAATGTTCAA
TTATTAATTTCTTATTTACGGTATAGAGCAAATGGCTTTCAGAGCTTGTT
AGTGGATGCCTATGTACTCTTGTCACCATGAAAAAGCATGTTGATACGAA
CACTTCCCCTGATTCCTACTTTTTATTCACTCATGCATACTCCACTTTAA
CTTTCATAACAATCTTTACTAAATGTCATTTATATCTTTTTTGTCTCGCC
CCTTATACCCTGATTATATACTTGCCTTTAACATATCTGCCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTCCATATATAAAAGCTGGCCT
TTAGCTCAACCCACCACAAAAGAAGAACAGAAAATCGATGTCAACAAACA
AGAAATAACACTCATTTAACTGCACCACAGGACACTAAAATATAATTTCA
CAACCACTTACATTTGTATCCAATTGATTACTTCTGTGTTCACCATAAAA
TTCACTTGAAAGGCCATAATGCTTCCATATCTAATATATTCATTTATTCA
GTTATGAATATGAGGATTTCAAAGCCTCTGAAAAATCACCATAGAAAAGT
TTCTACGGTGTGGAGCAATAAAAATGGAACAATCACAGAGCAATTAACTG
CAAGACAACATCACCAGACTAGAACTGTGTTTACACAGAAAGACAATATT
CTTTCAAATTGTACAGGTCTAAAGTGCACCAGCGAGAGGGATTCAGCTTA
CCAGACAGTTTTCAAGAGAAAGTGTCTTCTGTCAGGTATATGTGTGTGTA
TATCTGAGCTAGAAAGAAAGAGACAGAGACTGAGACAGACTGAGACAGAC
TGAGACTGAGACCGAGACTGAGACCGACCGAGACTGAGGGAGATGTGTTC
ATTATTTGTAACCTAGATGAATTAAACTCTTGCATTTTCAGTCACTGGTC
CATATTTCCGGATACCTGACAAAAAATAAAGGGAAATCCCCCGATATAAA
ACAAGCGTATGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_d10.b1 MSMg01no349_d10.b1 CHROMAT_FILE:
MSMg01no349_d10.b1 PHD_FILE: MSMg01no349_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:45 2005
         (449 letters)



>mm_chr14_90966790_90967638
          Length = 849

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgaaacattactcgccacactcgatggcttttggctggggtgcaggtagtcaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgaaacattactcgccacactcgatggcttttggctggggtgcaggtagtcaagca 260

                                                                       
Query: 61  ctcagttttatttaaaagtctggccaatgggagtttgatcatgctccagtgagtatatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagttttatttaaaagtctggccaatgggagtttgatcatgctccagtgagtatatgg 320

                                                                       
Query: 121 gaaacacaaactggaattttctttttttagtatctgtttcgtgcggaaacattacaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacacaaactggaattttctttttttagtatctgtttcgtgcggaaacattacaagta 380

                                                                       
Query: 181 gggcagacccggaacaggaattgaatgtgatcattgttcatgatgtcaatttctcaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcagacccggaacaggaattgaatgtgatcattgttcatgatgtcaatttctcaaata 440

                                                                       
Query: 241 atcaataaaaatattattttggaagaaaaataaaagaccttggaagtctagaaaatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaataaaaatattattttggaagaaaaataaaagaccttggaagtctagaaaatataa 500

                                                                       
Query: 301 tgaagcataaaaaaggttattgacagagcttatgacaattggctctcaataaacgtgact 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tgaagcataaaaaaggttattgacagagcttatgacaattggttctcaataaacgtgact 560

                                                                       
Query: 361 tctaatctttcattaactattatattccaactgatgatcttataatttccatacatgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaatctttcattaactattatattccaactgatgatcttataatttccatacatgaaa 620

                                        
Query: 421 taaaaagaatgttcaattattaatttctt 449
           |||||||||||||||||||||||||||||
Sbjct: 621 taaaaagaatgttcaattattaatttctt 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_d10.g1 MSMg01no349_d10.g1 CHROMAT_FILE:
MSMg01no349_d10.g1 PHD_FILE: MSMg01no349_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:45 2005
         (500 letters)



>mm_chr14_91142893_91143792
          Length = 900

 Score =  967 bits (500), Expect = 0.0
 Identities = 500/500 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtccatatataaaagctggcctttagctcaacccaccacaaaagaagaacagaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atgtccatatataaaagctggcctttagctcaacccaccacaaaagaagaacagaaaatc 641

                                                                       
Query: 61  gatgtcaacaaacaagaaataacactcatttaactgcaccacaggacactaaaatataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gatgtcaacaaacaagaaataacactcatttaactgcaccacaggacactaaaatataat 581

                                                                       
Query: 121 ttcacaaccacttacatttgtatccaattgattacttctgtgttcaccataaaattcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttcacaaccacttacatttgtatccaattgattacttctgtgttcaccataaaattcact 521

                                                                       
Query: 181 tgaaaggccataatgcttccatatctaatatattcatttattcagttatgaatatgagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgaaaggccataatgcttccatatctaatatattcatttattcagttatgaatatgagga 461

                                                                       
Query: 241 tttcaaagcctctgaaaaatcaccatagaaaagtttctacggtgtggagcaataaaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttcaaagcctctgaaaaatcaccatagaaaagtttctacggtgtggagcaataaaaatg 401

                                                                       
Query: 301 gaacaatcacagagcaattaactgcaagacaacatcaccagactagaactgtgtttacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaacaatcacagagcaattaactgcaagacaacatcaccagactagaactgtgtttacac 341

                                                                       
Query: 361 agaaagacaatattctttcaaattgtacaggtctaaagtgcaccagcgagagggattcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agaaagacaatattctttcaaattgtacaggtctaaagtgcaccagcgagagggattcag 281

                                                                       
Query: 421 cttaccagacagttttcaagagaaagtgtcttctgtcaggtatatgtgtgtgtatatctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cttaccagacagttttcaagagaaagtgtcttctgtcaggtatatgtgtgtgtatatctg 221

                               
Query: 481 agctagaaagaaagagacag 500
           ||||||||||||||||||||
Sbjct: 220 agctagaaagaaagagacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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