Query= MSMg01no350_d04.b1 MSMg01no350_d04.b1 CHROMAT_FILE:
MSMg01no350_d04.b1 PHD_FILE: MSMg01no350_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:03 2005
(262 letters)
>mm_chr14_29144167_29144825
Length = 659
Score = 437 bits (226), Expect = e-127
Identities = 249/258 (96%), Gaps = 3/258 (1%)
Strand = Plus / Plus
Query: 5 gaattcttggaattcacttagaccgttgttgaactttggtctactagctgaagccacttc 64
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggaattcacttagaccgttg---aactttggtctactagctgaagccacttc 261
Query: 65 atacactttatatccaggaagccagccactttgctgttcagcagaagggtaacttctgtg 124
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct: 262 atacactttatatccaggaagccagccgcttcgctgttcagcagaagggtaacttccgtg 321
Query: 125 tagagccgaggaaggaagggaagctttctgaatacactggggtatagtgtacatactagg 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagagccgaggaagggagggaagctttctgaatacactggggtatagtgtacatactagg 381
Query: 185 gcatggtgaatggaatgctaatcagggtgtattgttgggtggaggtgcagagagtggagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcatggtgaatggaatgctaatcagggtgtattgttgggtggaggtgcagagagtggagt 441
Query: 245 gacgctctaaagagggag 262
|| | |||||||||||||
Sbjct: 442 gatgttctaaagagggag 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 659
Length adjustment: 9
Effective length of query: 253
Effective length of database: 650
Effective search space: 164450
Effective search space used: 164450
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_d04.g1 MSMg01no350_d04.g1 CHROMAT_FILE:
MSMg01no350_d04.g1 PHD_FILE: MSMg01no350_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:03 2005
(343 letters)
>mm_chr14_29262054_29262797
Length = 744
Score = 619 bits (320), Expect = 0.0
Identities = 335/340 (98%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 1 tgtgacttataaacaaagacactcaggtacagaaagaaaagaagatttgattaggatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgtgacttataaacaaagacactcaggtacagaaagaaaagaagatttgattaggatctc 481
Query: 61 cagatagtgttt-ggggggggggtctcagatagctacgtctccaagtctgtgctctgtgg 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagatagtgtttgggggggggggtctcagatagctacgtctccaagtctgtgctctgtgg 421
Query: 120 ggtagacttctttgcagcctatctgacatcatgtcctatcctactctgagtgctcttcga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 420 ggtagacttctttgcagcctatctgacatcatgtcctatcctactctgagtgcgcttgga 361
Query: 180 gcccaggccaaccatcctgtctgtgacaatgcttttaaaatatttgtgagaacttgggat 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcccaggccgaccatcctgtctgtgacaatgcttttaaaatatttgtgagaacttgggat 301
Query: 240 gtggttcatcacagctgttacccacagagtgaggcccaggtcaatgaataatttcatact 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtggttcatcacagctgttacccacagagtgaggcccaggtcaatgaataatttcatact 241
Query: 300 ctgcttctggcttgataacttgattcggtgaggctgattc 339
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 240 ctgcttctggcttgataacttgattcggggaggctgattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space: 245490
Effective search space used: 245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
