BAC Information

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BAC

Clone NameMSMg01-351O05
Chromosome14 (Build37)
Map Location 99,415,937 - 99,489,417
singlet/doubletdoublet
Overlap gene2410129H14Rik, 6720463M24Rik, Dis3
Upstream geneDach1, LOC635593, LOC619716, LOC100043787
Downstream geneD14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351O05.T7 (MSMg01no351_o05.b1)MSMg01-351O05.TJ (MSMg01no351_o05.g1)
ACCAG463150AG463151
length739740
length of high quality
(start - end)		529 (51 - 579)516 (80 - 595)
definitionCHROMAT_FILE: MSMg01no351_o05.b1 PHD_FILE: MSMg01no351_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:14 2005CHROMAT_FILE: MSMg01no351_o05.g1 PHD_FILE: MSMg01no351_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,415,937 - 99,416,461)(99,488,902 - 99,489,417)
sequence
GGGGGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTTGCTTGAGTTAAGGATTTCTTGAGCTTGTGGTGCAGC
TCCATTGGTTGAATGCTAGCCTAGCAGGCCCAAGGTTCTGGGCTTCATCC
TCAAAACAAGAGAAACTCCCTAAAGAAATCCTTTTCAAAACAAAAATGGA
TTTCTTGGTAGAAGTTGGTGCCAGGGACAAGATATTTGTGATCCCTCAAA
AAGCAATATGCTAAATTCTTACCCTGGCCAAGGTGATAGTTTTAAGAGGT
GGGGTCTCCAGGGGTTCAGTAGGTGAGACAAGATGAGAGCCCAAGGGGAG
CCATTCTGTCCTTTCCACCACACTATGAGGACACAGACAACAAAGCCCAC
TGGTAGCTAAAAATGTAGTCTCCATTTTTATCTCAAAATTCTGATTAAGT
AGCCATGAATGGAACTTGGGAATCAGTAGTTTTGACAAATCCTTTACCGC
CAAGGTCTTTAGAGCTAGACTTCAGTCAAGAGACTCCAGTGGGTTGATCT
GTATTCCTACCTTTAGCTTCTTTCCGCATGAAGATTAGTTGGTTTGCTTT
ACATTTCAGCTCTAAAACTGCGGTTCTCACCAACTCTTAACCTTCCCTGT
TCCCACTTAAATGTCATAAGTACCTGGGTTCAAGAACTAACTCCCTTGGC
AATCTGTTTCCTATTCCAGTTTTTCTTGACTTGTTAATN

NNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTCATTGTGTGCTACTTG
AATGTGTTAGTATCCATATGCATATTCTAATTTGGAAGAAAAATGACTTC
ATTTTACTTAGAAGACATATAACTAAAGATTCTTGTTTTTATATTTCAGC
TTAAGACTGCTGTAAGTGAAAAAATGTTACGGCCTACAGGTCGAGTTGTG
GGGATAATAAAAAGGAACTGGAGACCGTATTGTGGCATGCTTTCCAAGTC
TGATATTAAGGAGGTAAGCAAAGCACTTGCTATCAGTGTTGAAAAGTGAT
AATGTCTGACTAGACTCCACAGCTCTCCCTTTGCCCTTTTTCCAGCTTTG
CTGTGACTATAAATTGGTTTTCCTCAGTGAGGGCTGTAACTCAGTGAGAG
TGCACTTGAAGAGCATGTGCTAGAACCTGTGATTGGCCCAGGACTGTAAT
TCTTCTTTTTAATTTTCTCTAGTCAAGAAGACATCTCTTTACACCCGCTG
ATAAGAGAATTCCACGAATTCGGATAGAAACCAGACAGGCTTCTGCGTTA
GAAGGACGGAGAATTATTGTCGCTATTGATGGTTGGCCTAGAAATTCTAG
ATATCCAAATGTAAACTTAAAATATTAATTTTATCTTTGTGCATTTAATT
AAAAATTTATAACTAATACTGATTTTTAACTAACATACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_o05.b1 MSMg01no351_o05.b1 CHROMAT_FILE:
MSMg01no351_o05.b1 PHD_FILE: MSMg01no351_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:14 2005
         (529 letters)



>mm_chr14_99415733_99416661
          Length = 929

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttgcttgagttaaggatttcttgagcttgtggtgcagctccattggttgaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgcttgagttaaggatttcttgagcttgtggtgcagctccattggttgaat 264

                                                                       
Query: 65  gctagcctagcaggcccaaggttctgggcttcatcctcaaaacaagagaaactccctaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctagcctagcaggcccaaggttctgggcttcatcctcaaaacaagagaaactccctaaa 324

                                                                       
Query: 125 gaaatccttttcaaaacaaaaatggatttcttggtagaagttggtgccagggacaagata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatccttttcaaaacaaaaatggatttcttggtagaagttggtgccagggacaagata 384

                                                                       
Query: 185 tttgtgatccctcaaaaagcaatatgctaaattcttaccctggccaaggtgatagtttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgtgatccctcaaaaagcaatatgctaaattcttaccctggccaaggtgatagtttta 444

                                                                       
Query: 245 agaggtggggtctccaggggttcagtaggtgagacaagatgagagcccaaggggagccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaggtggggtctccaggggttcagtaggtgagacaagatgagagcccaaggggagccat 504

                                                                       
Query: 305 tctgtcctttccaccacactatgaggacacagacaacaaagcccactggtagctaaaaat 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tctgtcctttccaccacactatgaggacacagacaacagagcccactggtagctaaaaat 564

                                                                       
Query: 365 gtagtctccatttttatctcaaaattctgattaagtagccatgaatggaacttgggaatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtagtctccatttttatctcaaaattctgattaagtagccatgaatggaacttgggaatc 624

                                                                       
Query: 425 agtagttttgacaaatcctttaccgccaaggtctttagagctagacttcagtcaagagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtagttttgacaaatcctttaccgccaaggtctttagagctagacttcagtcaagagac 684

                                                        
Query: 485 tccagtgggttgatctgtattcctacctttagcttctttccgcat 529
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccagtggtttgatctgtattcctacctttagcttctttccgcat 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_o05.g1 MSMg01no351_o05.g1 CHROMAT_FILE:
MSMg01no351_o05.g1 PHD_FILE: MSMg01no351_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:14 2005
         (516 letters)



>mm_chr14_99488702_99489617
          Length = 916

 Score =  998 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtcattgtgtgctacttgaatgtgttagtatccatatgcatattctaatttggaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 catgtcattgtgtgctacttgaatgtgttagtatccatatgcatattctaatttggaaga 657

                                                                       
Query: 61  aaaatgacttcattttacttagaagacatataactaaagattcttgtttttatatttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aaaatgacttcattttacttagaagacatataactaaagattcttgtttttatatttcag 597

                                                                       
Query: 121 cttaagactgctgtaagtgaaaaaatgttacggcctacaggtcgagttgtggggataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cttaagactgctgtaagtgaaaaaatgttacggcctacaggtcgagttgtggggataata 537

                                                                       
Query: 181 aaaaggaactggagaccgtattgtggcatgctttccaagtctgatattaaggaggtaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aaaaggaactggagaccgtattgtggcatgctttccaagtctgatattaaggaggtaagc 477

                                                                       
Query: 241 aaagcacttgctatcagtgttgaaaagtgataatgtctgactagactccacagctctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaagcacttgctatcagtgttgaaaagtgataatgtctgactagactccacagctctccc 417

                                                                       
Query: 301 tttgccctttttccagctttgctgtgactataaattggttttcctcagtgagggctgtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttgccctttttccagctttgctgtgactataaattggttttcctcagtgagggctgtaa 357

                                                                       
Query: 361 ctcagtgagagtgcacttgaagagcatgtgctagaacctgtgattggcccaggactgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctcagtgagagtgcacttgaagagcatgtgctagaacctgtgattggcccaggactgtaa 297

                                                                       
Query: 421 ttcttctttttaattttctctagtcaagaagacatctctttacacccgctgataagagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttcttctttttaattttctctagtcaagaagacatctctttacacccgctgataagagaa 237

                                               
Query: 481 ttccacgaattcggatagaaaccagacaggcttctg 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttccacgaattcggatagaaaccagacaggcttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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