BAC Information

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BAC

Clone NameMSMg01-352H21
Chromosome14 (Build37)
Map Location 76,346,844 - 76,517,668
singlet/doubletdoublet
Overlap geneGtf2f2, Kctd4, 1200011I18Rik, Nufip1
Upstream geneLrch1, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, LOC668504
Downstream geneLOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352H21.T7 (MSMg01no352_h21.b1)MSMg01-352H21.TJ (MSMg01no352_h21.g1)
ACCAG463607AG463608
length788796
length of high quality
(start - end)		411 (48 - 458)380 (77 - 456)
definitionCHROMAT_FILE: MSMg01no352_h21.b1 PHD_FILE: MSMg01no352_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:03 2005CHROMAT_FILE: MSMg01no352_h21.g1 PHD_FILE: MSMg01no352_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,346,844 - 76,347,250)(76,517,289 - 76,517,668)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGACTTATGTCGCACCTGTCATCTTTCACAAGCTTACACATC
TAGGCTTACAGAGCTTACAGTCCTCCTTGTGTCTTTATGACAGCCCATCT
ATCCATTCAGAAGGGCTTTCCCACTCTCCTCTTTTTCTACTTAGTCAAAA
TAATCTCCACCTTCAAAAGACTGATGTCATCTACTCTGTGAAACACATGA
TCAGCATTTCCTGAATCACTTTGTTTCTTCCCTTCAGTCACTTAAGACTA
AAATATGAATATCTGGCCATATAGCATATTTTTAAAGCGATATAATTTCC
ATTTTCATTTTGGTAAAAGGCAGATATTCTGCAAACACAGCAGGTGGCTT
GCCTGCTCGCATCTTCACATAAGTCCTTTATGGAAAAATTAAAACCACAA
AGAGGTCTCCATGAGTAGCCCAATACTTGATTTTGTACTTTTTCAACATT
TGTAGTTATCTGAAGATCATTTTTCTAAAAGCCCATATTATAGCATAAAC
TTTTTAGGCTGCAAAGAAGAAAAATCTTTTGCAGCTTTACAAAGAAATTT
TCTTTTTGAGGGGTTCCTTTCTTTGGCCCGGGGGGGTTTTAATTAGGGAA
AGAATTTCCAAGAACAGAACCCCTTTTTCCCTTTTTTTGCCCTCCCCCCA
AATAGCTCTTAAAATCCAAAAAAGGGGGGGGTGGGAAAAAACAATTATTA
AAAGCTGGTTTTTTTCTCGCCTTCCCCCAAACAGTGTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATTTATAAAGAAAGCTAGCAA
CACTGAACTAGACCAGCAGCCTCCAAGTCATCCAACTACCGCAGAGAAAA
GCTAGTGTCCAACAGGTCATTTCTATCCCAGCTAGCAGGGAACCACCTTC
ACTATCCCTGCTGTGAGCTTTCCAAACCCTGAGTGTCAGACAGAAGGTGG
AGTTACTACTTGTTTATCCTTCTATACAAAATAATACGGAAAGATCTAAT
CAACACATAACAAAGACAGAAGAGCCCAGTACTAGTGGAGAGGTGGGGCC
ATAAGAGGTAAAACAAGAAGCCACAGAGTGGCTGTATTTACAAGCTATGC
TCTATGGTTGAGAGTTTCAGGTAGCTTTCTCAAACTCTGAGACTAACTTC
ATGTCAGGCTGGAGGGCAAGGACCTGTAATCCTAGCTACTAAGAAGACTA
AGGACGAAGGATCGGGACTTCCAAACAACTGGGCTAATGCCTGGATTAAA
ATAGTCTGAGGACCGGAACCCGCCCGATTTTATAAGTTACGAGTTGGGGG
CAAAAAAAAGACATGGTGGCCCCTCTCCAGAACCCCCCTTCCATTTCCCC
CCAACCATAAGGGTCTTACTCCTTGTCAACCCCATTTCTCCGGAACCCAA
CGGGGCTTCGTGTCTTCCTTTACCCTTAGTAATTGTGTGAGCGCTTCCTT
ATCTTTACCCCCCTTTCCTCCTTATTTTTACCTCTTTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_h21.b1 MSMg01no352_h21.b1 CHROMAT_FILE:
MSMg01no352_h21.b1 PHD_FILE: MSMg01no352_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:03 2005
         (411 letters)



>mm_chr14_76346640_76347450
          Length = 811

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgacttatgtcgcacctgtcatctttcacaagcttacacatctaggcttacag 64
           |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgacttaagtggcacctgtcatttttcacaagcttacacatctaggcttacag 264

                                                                       
Query: 65  agcttacagtcctccttgtgtctttatgacagcccatctatccattcagaagggctttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcttacagtcctccttgtgtctttatgacagcccatctatccattcagaagggctttcc 324

                                                                       
Query: 125 cactctcctctttttctacttagtcaaaataatctccaccttcaaaagactgatgtcatc 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactctcctgtttttctacttagtcaaaataatctccaccttcaaaagactgatgtcatc 384

                                                                       
Query: 185 tactctgtgaaacacatgatcagcatttcctgaatcactttgtttcttcccttcagtcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactctgtgaaacacatgatcagcatttcctgaatcactttgtttcttcccttcagtcac 444

                                                                       
Query: 245 ttaagactaaaatatgaatatctggccatatagcatatttttaaagcgatataatttcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaagactaaaatatgaatatctggccatatagcatatttttaaagcgatataatttcca 504

                                                                       
Query: 305 ttttcattttggtaaaaggcagatattctgcaaacacagcaggtggcttgcctgctcgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttcattttggtaaaaggcagatattctgcaaacacagcaggtggcttgcctgctcgca 564

                                                          
Query: 365 tcttcacataagtcctttatggaaaaattaaaaccacaaagaggtct 411
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttcacataagtcctttatggaaaaattaaaaccacaaagaggtct 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_h21.g1 MSMg01no352_h21.g1 CHROMAT_FILE:
MSMg01no352_h21.g1 PHD_FILE: MSMg01no352_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:03 2005
         (380 letters)



>mm_chr14_76517089_76517868
          Length = 780

 Score =  658 bits (340), Expect = 0.0
 Identities = 370/380 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatttataaagaaagctagcaacactgaactagaccagcagcctccaagtcatccaac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 580 aacatttataaagaaagctagcaccactgaactagaccagcagcctccaagtcatccaac 521

                                                                       
Query: 61  taccgcagagaaaagctagtgtccaacaggtcatttctatcccagctagcagggaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 taccgcagagaaaagctagtgtccaacaggtcatttctatcccagctagcagggaaccac 461

                                                                       
Query: 121 cttcactatccctgctgtgagctttccaaaccctgagtgtcagacagaaggtggagttac 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 460 cttcactatccctgctgtgagctttccagaccctgagtgtcagacagaaggtggagtcac 401

                                                                       
Query: 181 tacttgtttatccttctatacaaaataatacggaaagatctaatcaacacataacaaaga 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 400 tacttgtttatccttctatacaaaataatacggaaagatctgatcaacacataacaaaga 341

                                                                       
Query: 241 cagaagagcccagtactagtggagaggtggggccataagaggtaaaacaagaagccacag 300
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 340 cagaagagcccagtgctagtggggaggtggggccataagaggtaaaacaagaagccacag 281

                                                                       
Query: 301 agtggctgtatttacaagctatgctctatggttgagagtttcaggtagctttctcaaact 360
           |||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct: 280 agtggctgtatttacaagctatgctctatgcttaagaggttcaggtagctttctcaaact 221

                               
Query: 361 ctgagactaacttcatgtca 380
           |||||||||| |||||||||
Sbjct: 220 ctgagactaatttcatgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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