BAC Information

Click to search

BAC

Clone NameMSMg01-352L07
Chromosome14 (Build37)
Map Location 98,564,123 - 98,734,129
singlet/doubletdoublet
Overlap geneDach1
Upstream geneEG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L07.T7 (MSMg01no352_l07.b1)MSMg01-352L07.TJ (MSMg01no352_l07.g1)
ACCAG463766AG463767
length766770
length of high quality
(start - end)		373 (55 - 427)416 (80 - 495)
definitionCHROMAT_FILE: MSMg01no352_l07.b1 PHD_FILE: MSMg01no352_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:21 2005CHROMAT_FILE: MSMg01no352_l07.g1 PHD_FILE: MSMg01no352_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,564,123 - 98,564,491)(98,733,714 - 98,734,129)
sequence
TCCTCTATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACAGAATTATCAAACTTTAATCCAAATCTGCAAACA
AGCAATTGACTGACACAAACAAACTTGACCATGGACATAATGACTTTTTG
TTGTTGCTGTTGTTGTTATTTAATGGTTAGCAGTTAATTAACTGACCTCC
GCTGCAACAGCCAAGTTCAGACAACTAATGTTTAGTTTTAAAATAATAAT
TGTAGGAAACTGACCAAGGTCAGACTTTGTCTTTCAACAACTTTGAAATG
GGTTTCCTTAGATGTTCTTTCATGTTTTGAGACCTGTATTATATTTAGGT
TTACTATCTAGAAGGTGACAGTGCCTTTTTCTTCTCCTAGAGGTAATGAC
AGATGGCTTCCACATTTACTCTAATTTTCATAGAGAGCATACTAATTCTA
TAGCCCCAAGCAAATTAAATCGACTTTAGGATTTGCTACCTTCCTGAGNC
ACTCTCTAATTGTTTATTAATGTTTTTTTTCCCTACCATCTCTTTTTACC
CTCCTAAAATTCTTCTTTATGTAAATATTTGCCGAGCCCTCCACATTATA
CTATTTATATACCCCCCTCCCATCAAACCTGAGAATATCATAATTTTATC
TTTTTCAACCTTCACCCGTTCCCCTTTTCTCTGTTTTCCCCCTCCCACCT
TTTTGTTTTTCTTTACATCCAACCCCCTCCTCCCCAAATTGGTCCCCATA
CCCCCCTTTCTTTTTG

NTTTTTCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTCTTTCCCGTGGAGAGCT
CGACTCCTGTCGCTTTTTCTTTCTGGACGTGAAGGAATTCTTCCATTATG
TTCTCAGTCATTATCTTAATGACGGATGACTTGGGGTTAATCTTGTATAA
GGACCTCTTCATATGATGACTTCTTCTTCCTCTATAGTATGCATCTTTTC
CGTCTTGATATTTTAAGATTTCTTTTCATTACGAATAGTTAGGATTTGAC
TTGTATCGTTTTATTTGAATTCATACTGCTTGCAAATAAAAATTGGGGGG
AGAAAAAGGATTTTAATGTTTCCCATATCCCTTGTCTTTCCTTATTGGTT
CCAGTTACACAGACACTACATGGTTAATATCATGCCACAGGTCACTGAAG
AGCTACTCATTCGGTTTTTATTTACAGTCTTTTCCCCATCTGTAAGACTG
AGTTTGGATAATTTCTGTTCTGTTTTTCATATCATTAATATTTCTACTGA
AAAATCCTGGATATTCCCTCGGATATTTTATTTCTTCCATTTAAAAGCCC
CTCTTACCGTTTTTTTACCAAAATGGTTAAATTGCCATATTTTCCCCCAT
TTTTCGTTTCCCCCCTTTTCTTACCTCTTATCAATGTCCAAAATTGATTC
TTAATCCCATACCCTAACTCTTATCCCCCCTTTCTCTCTCATCTTCATTC
CTCTTCTTTTTTTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l07.b1 MSMg01no352_l07.b1 CHROMAT_FILE:
MSMg01no352_l07.b1 PHD_FILE: MSMg01no352_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:21 2005
         (373 letters)



>mm_chr14_98563919_98564691
          Length = 773

 Score =  698 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagaattatcaaactttaatccaaatctgcaaacaagcaattgactgacacaa 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagaaaaatcaaactttaatccaaatctgcaaacaagcaattgactgacacaa 264

                                                                       
Query: 65  acaaacttgaccatggacataatgactttttgttgttgctgttgttgttatttaatggtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaacttgaccatggacataatgactttttgttgttgctgttgttgttatttaatggtt 324

                                                                       
Query: 125 agcagttaattaactgacctccgctgcaacagccaagttcagacaactaatgtttagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcagttaattaactgacctccgctgcaacagccaagttcagacaactaatgtttagttt 384

                                                                       
Query: 185 taaaataataattgtaggaaactgaccaaggtcagactttgtctttcaacaactttgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaaataataattgtaggaaactgaccaaggtcagactttgtctttcaacaactttgaaa 444

                                                                       
Query: 245 tgggtttccttagatgttctttcatgttttgagacctgtattatatttaggtttactatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggtttccttagatgttctttcatgttttgagacctgtattatatttaggtttactatc 504

                                                                       
Query: 305 tagaaggtgacagtgcctttttcttctcctagaggtaatgacagatggcttccacattta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagaaggtgacagtgcctttttcttctcctagaggtaatgacagatggcttccacattta 564

                    
Query: 365 ctctaattt 373
           |||||||||
Sbjct: 565 ctctaattt 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_l07.g1 MSMg01no352_l07.g1 CHROMAT_FILE:
MSMg01no352_l07.g1 PHD_FILE: MSMg01no352_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:21 2005
         (416 letters)



>mm_chr14_98733514_98734329
          Length = 816

 Score =  804 bits (416), Expect = 0.0
 Identities = 416/416 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactctttcccgtggagagctcgactcctgtcgctttttctttctggacgtgaaggaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tactctttcccgtggagagctcgactcctgtcgctttttctttctggacgtgaaggaatt 557

                                                                       
Query: 61  cttccattatgttctcagtcattatcttaatgacggatgacttggggttaatcttgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttccattatgttctcagtcattatcttaatgacggatgacttggggttaatcttgtata 497

                                                                       
Query: 121 aggacctcttcatatgatgacttcttcttcctctatagtatgcatcttttccgtcttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aggacctcttcatatgatgacttcttcttcctctatagtatgcatcttttccgtcttgat 437

                                                                       
Query: 181 attttaagatttcttttcattacgaatagttaggatttgacttgtatcgttttatttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attttaagatttcttttcattacgaatagttaggatttgacttgtatcgttttatttgaa 377

                                                                       
Query: 241 ttcatactgcttgcaaataaaaattggggggagaaaaaggattttaatgtttcccatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttcatactgcttgcaaataaaaattggggggagaaaaaggattttaatgtttcccatatc 317

                                                                       
Query: 301 ccttgtctttccttattggttccagttacacagacactacatggttaatatcatgccaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccttgtctttccttattggttccagttacacagacactacatggttaatatcatgccaca 257

                                                                   
Query: 361 ggtcactgaagagctactcattcggtttttatttacagtcttttccccatctgtaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggtcactgaagagctactcattcggtttttatttacagtcttttccccatctgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |