BAC Information

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BAC

Clone NameMSMg01-352P08
Chromosome14 (Build37)
Map Location 121,621,908 - 121,622,199
singlet/doubletsinglet
Overlap geneFarp1
Upstream geneMbnl2, Rap2a, LOC668835, LOC668837, Ranbp5, LOC100043837
Downstream geneStk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P08.T7 (MSMg01no352_p08.b1)MSMg01-352P08.TJ (MSMg01no352_p08.g1)
ACCAG463955AG463956
length760759
length of high quality
(start - end)
250 (83 - 332)369 (86 - 454)
definitionCHROMAT_FILE: MSMg01no352_p08.b1 PHD_FILE: MSMg01no352_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:41 2005CHROMAT_FILE: MSMg01no352_p08.g1 PHD_FILE: MSMg01no352_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGACCCCCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCGAG
AGGATCCGCGGAATTCCAAGTCTTCATGAGTCACTGCCTTCATGTTGTCA
AAGCCCCCATGATCGATCACTTCCCCAAAGCACAAGCCGTTGAGTGGGAA
ATGTCTCTCACAGACTTGCCTGTTAGACTCTTGACCCCTAAGTGGCTGCA
CGGCTTGGGGAAGTTGTGGAACCCTTAGGAGGCAGAACCTCACTGGCAGA
AGTGAATCACTGTGGGTAACTCGAGGCTTTACGGCCTGGCCCCAGCTCCG
GTTCACAGTTCTTGAGTGCAGTATAATCTGCCAGCTTTTTGATCCTGCCA
GCAGGCTTTCCTCGACTGCTGCTGATTCGTCTGCACTGATGACTGTCTCC
TGTTGTAGGATGTTTGATCACANCCTATGTCCCCCAAAAATGAAATAAAA
ATTATTGGCTTTATCTCTGCTGTCCCTCATCCTTATTAATCCTCCCCCTC
CCTCACCTTTACTTCTTCTCCATCATCCTACATTCACTCTTTCCTGCTTT
CATTTTCCCTCTTCCTCCCCTTTTTTCCCCTTTCCCCTTCCCCCCCCTTT
TTCTCTATCACTTCTCCTCCTCTACTTACCCCTCTTTTTCCCTACTTACT
TCTTATTTTATCCCTCTTTTAATTTATTTCCCCTCCCCCTTTATTTCATT
CTTTCTCCTCTTCCCTCCTTCTTCCTCCTTTTCCCTTTTCTAGACCACTT
TACCTTCCTT
CTCTTCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCCTCTGAAGCA
CTCTTAACAGAATTCAGAATCCGTTTCACAAAAGAGACCCTAAAAGTATC
TTGGACTGTAACGGTTAGAAGATGACTTGACAGGCTTTAAGGCCGTCTCA
CTTCATTATCAATCAAGGCTGCAGAGAACCCAGGCTGCAGCAAAACATGG
TCTCCTCCCCTTGGTCTTGTAGGCACAGATGGAAGAGAGGAGGGTGGAGC
CTGTAAGCACTTCAGAGCTAACGGTCACATAAACCCTACGGACATGTTTA
GTCGATTAGAGACTAGTGTCCGATTTCCCTCTGTCCACTCCAGTGAAAGC
ACCCCGCTGACAACCACTAACCTGGCAAGTTCTTCCTGGAGCTGTGTGTG
GTCGGGAGGGAATAATTTCACAACAAATTTAACAATGACGCGCTTCGGTC
CTGAAAAGACCAACCCCATCAGTAATTGTGTGGCGATCCAAGCCTTTCAG
GTCTCCATTAACCACCCTTCACCGATTCCTCTTTGTTCTCCCTAAGGCCT
CTTTCAACCCCTCATTCCCCCATCCCCCATCCTCCCCACCATGCCTCCCC
CTTGTTTTTTTTTCCCCCCTCCCCCCTTTTCTCTCAATCTTTCCCTCTCC
CCACCTTTTTTTTTTTTCCCCCTTCCCTTTCCTCTCCCCTTATTCCTCTC
CTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p08.g1 MSMg01no352_p08.g1 CHROMAT_FILE:
MSMg01no352_p08.g1 PHD_FILE: MSMg01no352_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:41 2005
         (369 letters)



>mm_chr14_121621631_121622399
          Length = 769

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  ggttagaagatgacttgacaggctttaaggccgtctcacttcattatcaatcaaggctgc 137
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggttggaagatgacttgacaggctttaaggccgtctcacttcattatcaatcaaggctgc 510

                                                                       
Query: 138 agagaacccaggctgcagcaaaacatggtctcctccccttggtcttgtaggcacagatgg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agagaacccaggctgcagcaaaacatggtctcctccccttggtcttgtaggcacagatgg 450

                                                                       
Query: 198 aagagaggagggtggagcctgtaagcacttcagagctaacggtcacataaaccctacgga 257
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aagagaggagggcggagcctgtaagcacttcagagctaacggtcacataaaccctacgga 390

                                                                       
Query: 258 catgtttagtcgattagagactagtgtccgatttccctctgtccactccagtgaaagcac 317
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 389 catgtttagtcgattagagactagtgtccgatttccctctgtccactccagtgaaaacag 330

                                                               
Query: 318 cccgctgacaaccactaacctggcaagttcttcctggagctgtgtgtggtcg 369
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 329 cccgctgacaaccactaacctggtaagttcttcctggagctgtgtgtggtcg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)