BAC Information

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BAC

Clone NameMSMg01-352P17
Chromosome14 (Build37)
Map Location 93,669,602 - 93,865,653
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P17.T7 (MSMg01no352_p17.b1)MSMg01-352P17.TJ (MSMg01no352_p17.g1)
ACCAG463973AG463974
length779770
length of high quality
(start - end)		518 (42 - 559)455 (78 - 532)
definitionCHROMAT_FILE: MSMg01no352_p17.b1 PHD_FILE: MSMg01no352_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:43 2005CHROMAT_FILE: MSMg01no352_p17.g1 PHD_FILE: MSMg01no352_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,669,602 - 93,670,109)(93,865,199 - 93,865,653)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCAAAGAAATGTCCAACCGATAAAATTAGTTTTGGATGGAGTAGT
TGAAAAGAAAAAAAAATAGCTCAAGGTAGGCATTTTTATTCATGGACTAT
AACTCAAAATATATTATTTACCACAGGCCCTTTATCCAAACTTTGTTTTG
TGTAAATGTTAGCAGGTAAATCACTTCATAGCATCTGACTCACTGTCTCA
AAATGCTTCTGAGCACTCAAGAATTACCAAGTTTAAGAAGCACTACTTAA
TCTTAACAATAATTTATAAAAATTATATATCCTTATATCCACAGTTAAAT
GTCATATTCACCTGTCATCAGAGAAATTACTCTTTACAACTGACAAAAAT
CTACTACAGAGATAATAACACCCAGCAAAAGTTCAGGGGTCTGGTGAGCA
ATCCCAATGGATATATCTACAGAACTAATCTATAAAGCCTAAGACTCGGT
GAATATTTCAGAATATGAGACAGAAATAGTGTAAGAGCCAGAGGAACAAG
GAGATTCAGCTGTGTCATGATAACATCAGAAGCCATATCTATTAAATCTC
ACCTTCTTGACTTCCCAAATGTGACCAGAGGGAAGATGACACCAAAGGAC
ATGTCCAACACGGAATGATAAAAATCCCCAGATGCCTCATTCCTATTTAT
AGGATTACAGGTTAATTGTATAAAATTGGCAGTTCGCCGAGACGAACCTT
CTCCTAGGTCATAACCAATTCTCCTGTTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTCTCCACAAATTTAACAAC
AATTAAGTTGTGTTACGCTGATCAAAATTTTCAACAAAATGCAGAAGTAA
CATCCTAGAAGCCTTGGAAAAGTAAAGTGGTACTTACCTCCAATAGGAAA
CTTCCTACCAAGGTCCTAGGTAACCAGAGAGATGGAACTTTATTTGGCTT
GGCATCCAATTTCACTTTAATGTTTCTATGTCTTCTTAACTCTTTCAAAT
GTATACAGTCCATGTATACTAGCTCTCTCAGTGTTTTAAAATTTCCCTAG
TATGTTGTATTCTTTCACTGCTTTTTATTTTTATTCTTATTGTATTCTTT
GCACAGAATTATTCTCCATTCCACTCCCATTTCGAAAAATTCCATCCATT
TCGCAAAATCTTCTACCACAACGGTTAAAATTGTGATCCTTTTTATAGTC
TTAAACTGCTTTTTTCTATTACTTCTACTGTGCTACTTCTTACTAATTCT
TGTCAAAAAAAATGTATTGTCCTGGATAGNTTGTATTACCCAACAACCTA
AAATAATCCGGGGTTCCCAGCTTGCCCTTCCAAAACTTTGGCTCCTTTAC
GCTAAAAATCCCCTTTTTCATTTCTCACAGGCGGGGGGGAGATCTTAAAC
TAAGGGGATCCGATAACATTCCCTTTGTCACCTCCCCTTTCCTATCCCTA
GTAACTCTTATTTTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p17.b1 MSMg01no352_p17.b1 CHROMAT_FILE:
MSMg01no352_p17.b1 PHD_FILE: MSMg01no352_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:43 2005
         (518 letters)



>mm_chr14_93669392_93670309
          Length = 918

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattcaaagaaatgtccaaccgataaaattagttttggatggagtagttgaaaagaaaa 70
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattcaaagaaatgaacaaccgataaaattagttttggatggagtagttgaaaagaaaa 270

                                                                       
Query: 71  aaaaatagctcaaggtaggcatttttattcatggactataactcaaaatatattatttac 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaaatagctcaaggtaggcatttttattcatggactataactcaaaatatattatttac 330

                                                                       
Query: 131 cacaggccctttatccaaactttgttttgtgtaaatgttagcaggtaaatcacttcatag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cacaggccctttatccaaactttgttttgtgtaaatgttagcaggtaaatcacttcatag 390

                                                                       
Query: 191 catctgactcactgtctcaaaatgcttctgagcactcaagaattaccaagtttaagaagc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 catctgactcactgtctcaaaatgcttctgagcactcaagaattaccaagtttaagaagc 450

                                                                       
Query: 251 actacttaatcttaacaataatttataaaaattatatatccttatatccacagttaaatg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actacttaatcttaacaataatttataaaaattatatatccttatatccacagttaaatg 510

                                                                       
Query: 311 tcatattcacctgtcatcagagaaattactctttacaactgacaaaaatctactacagag 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcatattcacctgtcatcagagaaattactctttacaactgacaaaaatctactacagag 570

                                                                       
Query: 371 ataataacacccagcaaaagttcaggggtctggtgagcaatcccaatggatatatctaca 430
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ataataacagccagtaaaagttcaggggtctggtgagcaatcccaatggatatatctaca 630

                                                                       
Query: 431 gaactaatctataaagcctaagactcggtgaatatttcagaatatgagacagaaatagtg 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaactaatctataaagcctaagactcggtgaatatttcagaatatgagacagaaatagtg 690

                                       
Query: 491 taagagccagaggaacaaggagattcag 518
           ||||||||||||||||||||||||||||
Sbjct: 691 taagagccagaggaacaaggagattcag 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_p17.g1 MSMg01no352_p17.g1 CHROMAT_FILE:
MSMg01no352_p17.g1 PHD_FILE: MSMg01no352_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:43 2005
         (455 letters)



>mm_chr14_93864999_93865853
          Length = 855

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattctccacaaatttaacaacaattaagttgtgttacgctgatcaaaattttcaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tcattctccacaaatttaacaacaattaagttgtgttacgctgatcaaaattttcaacaa 596

                                                                       
Query: 61  aatgcagaagtaacatcctagaagccttggaaaagtaaagtggtacttacctccaatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aatgcagaagtaacatcctagaagccttggaaaagtaaagtggtacttacctccaatagg 536

                                                                       
Query: 121 aaacttcctaccaaggtcctaggtaaccagagagatggaactttatttggcttggcatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaacttcctaccaaggtcctaggtaaccagagagatggaactttatttggcttggcatcc 476

                                                                       
Query: 181 aatttcactttaatgtttctatgtcttcttaactctttcaaatgtatacagtccatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aatttcactttaatgtttctatgtcttcttaactctttcaaatgtatacagtccatgtat 416

                                                                       
Query: 241 actagctctctcagtgttttaaaatttccctagtatgttgtattctttcactgcttttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 actagctctctcagtgttttaaaatttccctagtatgttgtattctttcactgcttttta 356

                                                                       
Query: 301 tttttattcttattgtattctttgcacagaattattctccattccactcccatttcgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tttttattcttattgtattctttgcacagaattattctccattccactcccatttcgaaa 296

                                                                       
Query: 361 aattccatccatttcgcaaaatcttctaccacaacggttaaaattgtgatcctttttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aattccatccatttcgcaaaatcttctaccacaacggttaaaattgtgatcctttttata 236

                                              
Query: 421 gtcttaaactgcttttttctattacttctactgtg 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gtcttaaactgcttttttctattacttctactgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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