Query= MSMg01no353_h13.b1 MSMg01no353_h13.b1 CHROMAT_FILE:
MSMg01no353_h13.b1 PHD_FILE: MSMg01no353_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:21 2005
(558 letters)
>mm_chr14_76598449_76599406
Length = 958
Score = 951 bits (492), Expect = 0.0
Identities = 503/508 (99%), Gaps = 3/508 (0%)
Strand = Plus / Minus
Query: 51 tttcttccaactaggcttcaaggctggactgagtcttggcttcccaacatgactccatct 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tttcttccaactaggcttcaaggctggactgagtcttggcttcccaacatgactccatct 899
Query: 111 atagcactaggtcatacagcccggcttagctataagtgtttggttggtaaacatttgttt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 atagcactaggtcatacagcccggcttagctataagtgtttggttggtaaacatttgttt 839
Query: 171 aaatgcacatttaaaaaaaaataagtgttattatatgtgaacacacactgaccatggagg 230
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaatgcacatttaaaaaaa---aagtgttattatatgtgaacacacactgaccatggagg 782
Query: 231 agcatgtgttaaggtcagaggtcaggtctctccttccaccatatggtggtcccagcgatt 290
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 781 agcatgtgttaaggtcagaggtcaggtctctccttccaccatatgggggtcccagcgatt 722
Query: 291 gaactcagggcatcagccttcccctgctgagcaatctcaccagccccgttgagatgaatt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaactcagggcatcagccttcccctgctgagcaatctcaccagccccgttgagatgaatt 662
Query: 351 tcaagtaaattgcaaagtaccatgctacaggaagccaggttccttgcttcatgctagcgg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcaagtaaattgcaaagtaccatgctacaggaagccaggttccttgcttcatgctagcgg 602
Query: 411 agaggcaaaacaatgttaggagctggcattgaggggcagcctttggatgccctggtccca 470
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 601 agaggcaaaacaatgttaggagctggcactgaggggcagcctttggatgccctggtccca 542
Query: 471 ttaagaacctaagaaagtgggcagtgatggcccacgcctttaatcccagcacttaggagg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttaagaacctaagaaagtgggcagtgatggcccacgcctttaatcccagcacttaggagg 482
Query: 531 cagaggcaggtgaatttctgagttcaag 558
||||||||||||||||||||||||||||
Sbjct: 481 cagaggcaggtgaatttctgagttcaag 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_h13.g1 MSMg01no353_h13.g1 CHROMAT_FILE:
MSMg01no353_h13.g1 PHD_FILE: MSMg01no353_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:21 2005
(441 letters)
>mm_chr14_76463733_76464575
Length = 843
Score = 677 bits (350), Expect = 0.0
Identities = 396/412 (96%), Gaps = 5/412 (1%)
Strand = Plus / Plus
Query: 1 aacagggtaagccatattttttaaggaagggatacaatcacccaaatgcataatgtggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagggtaagccatattttttaaggaagggatacaatcacccaaatgcataatgtggga 260
Query: 61 aatattaaaggataaatgattcagtttttt--actaaataaatagtattgagtaataagg 118
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aatattaaaggataaatgattcagttttttttactaaataaatagtattgagtaataagg 320
Query: 119 agaatgattgagactctatctttttaaagattttaaagtttaaccttctaggattctgtt 178
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 agaatgattgagactctatctttttaaagattttaaagtttaaacttctaggattctgtt 380
Query: 179 gataaaaatctgaacactgagtatttagcaatggtaaataattgtttatcttctgtctgt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataaaaatctgaacactgagtatttagcaatggtaaataattgtttatcttctgtctgt 440
Query: 239 ggggactatattgatggtgagagcaaaccatctgcaaatggcaatacaataaatgtaatg 298
|||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggacaagaaagatggtgagagcaaaccatctgcaaatggcaatacaataaatgtaatg 500
Query: 299 atgagaagatgagagtggcctcctctctctctgtctcctctctctctctgtctctctctg 358
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 501 atgagaagatgagagtggcctcctctctctctgtctt-tctctctctctctctctctctc 559
Query: 359 tctctctctctgtctcctctctctctctctctctctctctctctctctctct 410
||||||||||| |||| ||||||||| |||| |||| |||||||||||||||
Sbjct: 560 tctctctctctctctc-tctctctctgtctc-ctctgtctctctctctctct 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 843
Length adjustment: 9
Effective length of query: 432
Effective length of database: 834
Effective search space: 360288
Effective search space used: 360288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
