Query= MSMg01no353_j24.b1 MSMg01no353_j24.b1 CHROMAT_FILE:
MSMg01no353_j24.b1 PHD_FILE: MSMg01no353_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:33 2005
(410 letters)
>mm_chr14_56610709_56611518
Length = 810
Score = 627 bits (324), Expect = 0.0
Identities = 367/394 (93%), Gaps = 21/394 (5%)
Strand = Plus / Minus
Query: 18 tgtatcctgggtattctgtattttttgtttaatatccacttattagtaaggacataccat 77
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 810 tgtatcctgggtattctgtattttttgtttaatatccacttattagtaagtacgtaccat 751
Query: 78 a-atatacttttgggtctgagactatggatgatgatattttctagtttccatccatttgc 136
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 750 acatatacttttgggtctgagactatggatgatgatattttctagtttccatacatttgc 691
Query: 137 cagtaaaactcatgatgtcttcattctaaatagctgagtagtgtagaggaattttcccct 196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cagtaaaactcatgatgtcttcattctaaatagctgagtagtgtagaggaattttcccc- 632
Query: 197 aattaattaattaattaattaattaattaattaattaattggataataaggatgacaaac 256
||||||||||||||||||||||||||||||||||||||| |
Sbjct: 631 -------------------taattaattaattaattaattggataataaggatgacaagc 591
Query: 257 caattgctgggtaaaaaggaggaagcaggccttccaggtccgagagagggaagggggtgc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 caattgctgggtaaaaaggaggaagcaggccttccaggtccgagagagggaagggggtgc 531
Query: 317 cagagaaaggaaccttggttaggtgggaagctagaggaaaaaatgtagaccaagaactgt 376
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 530 cagagaaaggaaccttggttaggtgggaagctagagggaaaaatgtagaccaagaactgt 471
Query: 377 taggcctggaggtgaattccatcaccgggagatt 410
|||||||||||||||||||||||||| |||||||
Sbjct: 470 taggcctggaggtgaattccatcaccaggagatt 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_j24.g1 MSMg01no353_j24.g1 CHROMAT_FILE:
MSMg01no353_j24.g1 PHD_FILE: MSMg01no353_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:33 2005
(284 letters)
>mm_chr14_56423158_56423841
Length = 684
Score = 480 bits (248), Expect = e-140
Identities = 272/284 (95%), Gaps = 8/284 (2%)
Strand = Plus / Plus
Query: 1 caggccagcctggtcttcataataagctcttgtcagagagtgggctgagtgaggagagtg 60
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caggccagcctggtcttcatactaagctcttgtcagagagtgggctgaatgaggagagtg 260
Query: 61 gacatggggttaagtaatcaagtcaaatccatatatagacagacagatgacggtttggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gacatggggttaagtaatcaagtcaaatccatatatagacagacagatgacagtttggaa 320
Query: 121 cccagatttgttttctgtgttttgggggtgaattttaatcaggaaacctgaagaggtacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagatttgttttctgtgttttgggggtgaattttaatcaggaaacctgaagaggtacc 380
Query: 181 attcttttttttttttttttgtataattttttctttttttaaaatattttttattattat 240
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 attcttttttttt-------gtataattttttctttttttaaaatattttt-attattat 432
Query: 241 gtatttttctcaattacatttagaatgctaccccaaaagtcccc 284
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 433 gtatttttctcaattacatttagaatgctatcccaaaagtcccc 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
