BAC Information

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BAC

Clone NameMSMg01-354J10
Chromosome14 (Build37)
Map Location 81,833,167 - 81,833,697
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672828, LOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354J10.T7 (MSMg01no354_j10.b1)MSMg01-354J10.TJ (MSMg01no354_j10.g1)
ACCAG465181AG465182
length741750
length of high quality
(start - end)
655 (50 - 704)530 (78 - 607)
definitionCHROMAT_FILE: MSMg01no354_j10.b1 PHD_FILE: MSMg01no354_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:47 2005CHROMAT_FILE: MSMg01no354_j10.g1 PHD_FILE: MSMg01no354_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTACCTCTGAACCCCATTTTTAATGGGGTTTTTCGA
ATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTC
CCCAATAAGATTTAGGTTTGGTAAAAATTCTTTTCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTT
TATGGGGTCCAATTTGTCAATCTTGATCTTATAGCACAATACATTGCTGT
TCTGTTTAGGAATTTATCCCCTGTGTCCATATCTTCAAGGCTTTTCGCCA
ATTTCTCCTCTACTAATTTCAGTGTCTCTGGTCTTATGTGGAGGTCTTTG
ATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCT
AATTCTTCTACATACTAAATGCCAGTTGTGCCAGCAGGATTTGTTGAAAA
TGCTCTCATTTTTCCACTGGATAGTTTTAGCTCACTTGTCAAAGATCAAG
TGACCATAGGTATGTGGATTCGTTTCTGGGTCTTCAATTCTATTCCATTG
ATCTACCTGTCTATCATTGTACCAATACCATGCAGTCTTTATCACAATTG
CTCTGTAGTATAGCTTAATGTCATGCATGGTGATTCCACCAGAGGCTCTT
TTGTTGTTGAGAATAGTTTTTGCTATCCGAGGTTTTTTAAA
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGTTGCTCTTTTTTTCTGAG
TTAATAGTTAAAGGAACTCACATTTACTTACATAATAAAAAACATGTAAA
TTTATTGAATTATTTGTAACAAAGAATTCGTGATTAATGGTAATTGTAAT
CCATTTTGGTGGTTATAATGGTGATTTACAAAATTCACTGGGAAGTATGT
ATACCTCCTAGAATAGAGAACTAAGAAATGTATTTGTACTGGTTGAGGTG
GGGGCTTATATATCTGTTGTGTATGTGCAATGTCACCTACAGGTTCATGT
TTAATATCACTTAGTCTAGTTGGTGGATATATTTTGATAGGAGGTGGAAA
ACTTAGAAATTGGAACCTACCTAGAAGAACTGGGTTGCTGTGTGGGGGCT
GAGGAGAGTTATACCTGGTCCTGGGTCTCTTCCTACACCTCTGTTTCTTA
TATCCCATGACACAAAGAAGTTTCTCTCTCTAATCCCCACTATCATAGGA
TATTAAGACCAGTGCATAGGGCTGAACAGTCATGGAATGAACACCTGAAA
CAGAGCCAATATAAATTGTTCTTCAATTAAATTGTTACGTTCACACATTT
TCTTATAGTGAGCAAAATAGCCAAAATATTATCCCAATTGAATGTGGTGG
AAAGCTGTATCTCAAAAGAATCATAGGTATAATTAATGAATTGATTCTCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_j10.g1 MSMg01no354_j10.g1 CHROMAT_FILE:
MSMg01no354_j10.g1 PHD_FILE: MSMg01no354_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:47 2005
         (530 letters)



>mm_chr14_81832967_81833897
          Length = 931

 Score =  949 bits (491), Expect = 0.0
 Identities = 521/531 (98%), Gaps = 1/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggttgctc-tttttttctgagttaatagttaaaggaactcacatttacttacataat 59
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggttgctcatttttttctgagttaatagttaaaggaactcacatttacttacataat 260

                                                                       
Query: 60  aaaaaacatgtaaatttattgaattatttgtaacaaagaattcgtgattaatggtaattg 119
           ||| |||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aaagaacatgcaaatctgttgaattatttgtaacaaagaatccgtgattaatggtaattg 320

                                                                       
Query: 120 taatccattttggtggttataatggtgatttacaaaattcactgggaagtatgtatacct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatccattttggtggttataatggtgatttacaaaattcactgggaagtatgtatacct 380

                                                                       
Query: 180 cctagaatagagaactaagaaatgtatttgtactggttgaggtgggggcttatatatctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagaatagagaactaagaaatgtatttgtactggttgaggtgggggcttatatatctg 440

                                                                       
Query: 240 ttgtgtatgtgcaatgtcacctacaggttcatgtttaatatcacttagtctagttggtgg 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtggatgtgcaatgtcacctacaggttcatgtttaatatcacttagtctagttggtgg 500

                                                                       
Query: 300 atatattttgataggaggtggaaaacttagaaattggaacctacctagaagaactgggtt 359
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatattttgataggaggtgaaaaacttagaaattggaacctacctagaagaactgggtt 560

                                                                       
Query: 360 gctgtgtgggggctgaggagagttatacctggtcctgggtctcttcctacacctctgttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtgtgggggctgaggagagttatacctggtcctgggtctcttcctacacctctgttt 620

                                                                       
Query: 420 cttatatcccatgacacaaagaagtttctctctctaatccccactatcataggatattaa 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttatatcccatgacacaaaggagtttctctctctaatccccactatcataggatattaa 680

                                                              
Query: 480 gaccagtgcatagggctgaacagtcatggaatgaacacctgaaacagagcc 530
           | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcccagtgcatagggctgaacagtcatggaatgaacacctgaaacagagcc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space:   478920
Effective search space used:   478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)