BAC Information

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BAC

Clone NameMSMg01-355D03
Chromosome14 (Build37)
Map Location 114,188,621 - 114,189,019
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355D03.T7 (MSMg01no355_d03.b1)MSMg01-355D03.TJ (MSMg01no355_d03.g1)
ACCAG465640AG465641
length748763
length of high quality
(start - end)
539 (45 - 583)399 (78 - 476)
definitionCHROMAT_FILE: MSMg01no355_d03.b1 PHD_FILE: MSMg01no355_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:34 2005CHROMAT_FILE: MSMg01no355_d03.g1 PHD_FILE: MSMg01no355_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGCATAGCCAGGAACTTAAACAGAACAGGAACCTGGAAACAGGA
GTTGATGCAGAAACCATGGAAGGGTGCTGCTTATTGGCTTACTATTTGTA
ACTTACTCAGTCTGTTTTCTTATAGAACCAGCCTAGGATTAACACCACCT
ACCATGGGCTGAGCCATCTTGTGTCAATCATTAAATAAGAAAATGCCTCA
CAGCTCTATCTTATAAAGATGTTTTCTCAATTAAAGTTTATTCCTTTCAG
ATAACTTTACTTGTGCCAAATGTACAGCTTGACATAAAACTAGGACATAT
ACCACTCTAGGACATATATCCAAAAGATGTTTCATCCTACCACAGAAATG
TGGTCCCACCCTACTACAATTCAACCATGTTCATTGATGCTTTTTTAGAA
ATAATAGTCAGAAATCTAAAATAAATGTACCTCAACAGAAAAAAAATGGA
TAATGAAAATGTGGTGTAAAAAATGAAATTATGAAATTCATGGAGAGATG
GATAGAACTAGGATACAAATAAAACAAAACAACAAAAACATAGGCAAAGA
AAACCCAAAAAAATCTAAAACCAAAAAACACAACAACCTGATCTGATGTG
AGGTACGACAGAGAACAAGAACTATGTTTTCGCTTTGCTTGTGCGCGGAC
ATTACCTGTCATTGCCTACCCCTACTTTCTCCTACCTAACCTTCTTAG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGATTTCTCCATCTGCTTTAAAA
TAAAATGTATTTCATTAATACTAGAGTTGGGCTGTGTCTCTGTGTATGCA
ACACATACATGCATGCTTGCTACTTGCAGAAGTGGAAGAAATAATTGGGT
CTTTAGGAACTAAAGTTAGGGATTGTTCAAAGCCACTGCATGGGTGCTGG
AAACCAAAGCTTTTAACTACTGAGCCATTTCTGCAACTACTTCTGCGTGA
GTTTTAAGGTCTTTTATCAAAGCGTGTGCTAGCATTTCCTTAACACAGCT
CACAAACAAGACCTCGGAACTCTCCATTGATTCATTTAAATCTATGCCTT
GAGCATTAGCAGGAGAAGCAATTTAATGAACCAGATACTGATATTTATTA
ATGATGTAGCCAGAGATTTTTAAATTACTTGGAATGTTGGAAAGTAATTC
TCTAAGTTATTTCACATATTATATTACAGCACTAAATAATTAACAAGCTA
TAACTACTCCTAAGTATTTTCATACCCCATGTTCAACCATGAATTTTCCT
CATAATCTTATATCAATATTTTATCTCTACTGAATATCCCTAGCTTTTAA
AAATCATTTCACTCCGCCTTTAGGTAGCTATTTGTTTATCTACTCCATGC
AAAGGAACCTCGATATTGCCCCCCTCATTTCAACCTTCCTCCAAAAACCT
TCCACCAACTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_d03.g1 MSMg01no355_d03.g1 CHROMAT_FILE:
MSMg01no355_d03.g1 PHD_FILE: MSMg01no355_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:35 2005
         (399 letters)



>mm_chr14_114188421_114189219
          Length = 799

 Score =  733 bits (379), Expect = 0.0
 Identities = 394/399 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatttctccatctgctttaaaataaaatgtatttcattaatactagagttgggctgtgt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatttctccatctgttttaaaataaaatgtatttcattaatactagagttgggctgtgt 260

                                                                       
Query: 61  ctctgtgtatgcaacacatacatgcatgcttgctacttgcagaagtggaagaaataattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtgtatgcaacacatacatgcatgcttgctacttgcagaagtggaagaaataattg 320

                                                                       
Query: 121 ggtctttaggaactaaagttagggattgttcaaagccactgcatgggtgctggaaaccaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ggtctttaggaactaaagttagggattgttcagagccactgcatgggtgctggaaaccaa 380

                                                                       
Query: 181 agcttttaactactgagccatttctgcaactacttctgcgtgagttttaaggtcttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttttaactactgagccatttctgcaactacttctgcgtgagttttaaggtcttttat 440

                                                                       
Query: 241 caaagcgtgtgctagcatttccttaacacagctcacaaacaagacctcggaactctccat 300
           ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 441 caaagcgtgtgctagcatttccttaacacagctcacaaacacgacttcgggactctccat 500

                                                                       
Query: 301 tgattcatttaaatctatgccttgagcattagcaggagaagcaatttaatgaaccagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattcatttaaatctatgccttgagcattagcaggagaagcaatttaatgaaccagata 560

                                                  
Query: 361 ctgatatttattaatgatgtagccagagatttttaaatt 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgatatttattaatgatgtagccagagatttttaaatt 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)