BAC Information

Click to search

BAC

Clone NameMSMg01-355D13
Chromosome14 (Build37)
Map Location 71,555,125 - 71,555,460
singlet/doubletsinglet
Overlap genenone
Upstream gene9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
Downstream geneLOC100043132, LOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355D13.T7 (MSMg01no355_d13.b1)MSMg01-355D13.TJ (MSMg01no355_d13.g1)
ACCAG465660AG465661
length725750
length of high quality
(start - end)		640 (53 - 692)336 (82 - 417)
definitionCHROMAT_FILE: MSMg01no355_d13.b1 PHD_FILE: MSMg01no355_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:36 2005CHROMAT_FILE: MSMg01no355_d13.g1 PHD_FILE: MSMg01no355_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTTTTTGATTATTTTATTGAGAATTTTTGCAACTGTG
TTTATGAGGGAAAGTGAACTCTATTGTTTATCATTGTGTCTTTGTCTGGT
TTGATATTAGGTCAATGATGGCTTTATAAAAAGAGTTTAGAAGAATTTTC
TCCTTTCCTATTTTGTGGAATAATTTGAATAGCATTGGCTGTAGATCTTT
TTCAGAGGTCTGGTAGAATTCTGCAGTGAATTCAGTTTGCTAGCATTTTA
TTGAGATTTTTTTGCATCTGTATTAACAAGGGAGAAATCCTGGGGACTTT
GTGTTTGTCACTACTTCGGTTTATTGTTGGTTATAGGTCTCTTTAAATTC
TTTACTTCAACTTGGTGTAATTTTGGTAGATCATATGCACCTAGAAATTC
ATTCATCTCTTTGATATTTTTCAACACAAAAGTAGAATATATATTGTGGA
ATATATGTTTTTAAGATATGCCTTATGATTTTTCTGAATTTCATTGGTAT
CTGTTATGTCTCCTTCATCTCAGTTTTATTAATTTGGGCATTCCACTTGT
TCCTTTAGTTAATTTAGCTAATGATTTGTTAGCCTTGTTTATCTTTTAAA
AGAGCCAGCTCTTTTTTTCTCATTTTTATACTGCTTATATAACTTCTATT
TCATCAATTTTTTTTGCTTCAATCN

NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCACGCCGAAATGGAT
TATTGCATGTGTCCATTGTCTTGAGAGCCACCCTTTTCAAATATTCTAAT
ACTCGCATTGGCTCATCTGTCCACTTACTGATTTATTTGAAGGCAGATTG
GTGTGAGGAAGCAGCAGCCAGGAAGGACCCTTTAAGGATGAGGTCTGAGG
GATGGGAAGGATCAGCTTGGTTGTTGAGTCACCTATTCAGCTATAAATCC
TTGGAGCAGGTGCAGAAGTGTCCCCAAGAGTCAACCTGGAGTGACAGTTC
ATTCATATCTGTCTTTACCACTTATCATTTTTTCTTCTTTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTCNTTTNTTTTTTTTTCTTTTTT
TTTTTTTCTTCTCCCTCTTCTTCTTTTTTCTTCCCTTTTCCTCTCCCTCC
CTTTTTTTTTTCTCCCTTTCTCCCCTTCCTTTTTCTCTCCCTTCTCTTTC
TTTTTTTCCCCTCCCCCTTCTTTTCCCTTTTTTTTCCCTCCTTTTTTTTC
TTTCTTTTTCTCTTTCTTTTTTCTCTCCCCCTTTTCCCTCTTTCTCCTCT
TCCTCCCCTTCTCCTTTTCCTTCTTTTTTTCATTTCTCTCCACCCCCCTC
CTCACTTTCTTTCTCGATCTACTTGCATCCTGTAATTTCCCCGCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_d13.g1 MSMg01no355_d13.g1 CHROMAT_FILE:
MSMg01no355_d13.g1 PHD_FILE: MSMg01no355_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:37 2005
         (336 letters)



>mm_chr14_71554953_71555688
          Length = 736

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accccacgccgaaatggattattgcatgtgtccattgtcttgagagccacccttttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 accccacgccgaaatggattattgcatgtgtccattgtcttgagagccacccttttcaaa 449

                                                                       
Query: 61  tattctaatactcgcattggctcatctgtccacttactgatttatttgaaggcagattgg 120
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 448 tattctaatactcacattggctcatctgtccgcttactgatttatttgaaggcagattgg 389

                                                                       
Query: 121 tgtgaggaagcagcagccaggaaggaccctttaaggatgaggtctgagggatgggaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtgaggaagcagcagccaggaaggaccctttaaggatgaggtctgagggatgggaagga 329

                                                                       
Query: 181 tcagcttggttgttgagtcacctattcagctataaatccttggagcaggtgcagaagtgt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcagcttggttgttgagtcacatattcagctataaatccttggagcaggtgcagaagtgt 269

                                                                       
Query: 241 ccccaagagtcaacctggagtgacagttcattcatatctgtctttaccacttatcatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccccaagagtcaacctggagtgacagttcattcatatctgtctttaccacttatcatttt 209

                                               
Query: 301 ttcttctttgtgtgtgtgtgtgtgtgtgtgtgtgtg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcttctttgtgtgtgtgtgtgtgtgtgtgtgtgtg 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |