BAC Information

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BAC

Clone NameMSMg01-355D18
Chromosome14 (Build37)
Map Location 19,172,694 - 19,173,000
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355D18.T7 (MSMg01no355_d18.b1)MSMg01-355D18.TJ (MSMg01no355_d18.g1)
ACCAG465670AG465671
length731761
length of high quality
(start - end)		539 (49 - 587)413 (79 - 491)
definitionCHROMAT_FILE: MSMg01no355_d18.b1 PHD_FILE: MSMg01no355_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:37 2005CHROMAT_FILE: MSMg01no355_d18.g1 PHD_FILE: MSMg01no355_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCAATGATGAGAATTGATGAGAGGTACCGTACAGTAGGATG
CATGCCTTTCCATAGATACCCAGGAGACATAAGGCTGAGTCATATCACTC
TGCTTCACACTGCTTTCTGTAGTGGCCGCACAAGCTTTCACTCCCACAGA
ATAAGGTTCCTCCACCCTCAGCATCATGGATGTCCTTTCTTGCCTTAACC
ATTGCTGATTTTGTGGGGTAAGGTGAGAGTTCTGTGTAGTTTTAATTTTC
ATTGCTCTGTGGCTAAGGATTTAGACTACTCTTTAAAATATTTCTCAGTG
TTTCACATTTCTTCAAGAACACTTTGTTTAATTTCATAGTTCATTTTGTT
GTTGTTGTTGTTTTCCCAAGCTGGGCTGATTGTTTTCTTTATTTTTAAAA
AGTTCTTTATATATTCTAGACACTAATCGTCTGTCAAATATGTATCTGAC
AAAGACTTGTTTCCATCCTGTAAGCTCTCTCTTCACTCAATTAAGGTTTC
TTTGGGAATCTTATATGATACCACTCTACCACTGATTTAGTGGTTTAAAT
GAAAATGGTTTCAGAGAATTCAGGTGTTGGAAATGAGAAATGCGAAACCC
CAGAAATACAAAGAATTCCTATGCCCCAATTCCTGAGATCCTATGGTTTA
AAATATCCTACAATATAATAATAGGTAAATA

NCCCCCGATGATAGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTTTAATGTGGTTACTTGGTTTTCTGGAGTCTAACTTTTTGGGTTCTTT
ATATATATTAGATATTAGCCCTCTATCGGATGTAGGAATGGTGATCTTTT
CCCAATCTGTTGGTTGCCTTTTTGTCTCACTGACAGTGTCCTTTGCCTTA
CAGAAGTTATGCAATTTTATGAGATTCCATTTGCTAATTCTTGATCTTAC
CAGTATCTCCAGAGCTCCCTGTTACCAAACCACCAACCAAAGAAAACATA
TGGTGGGACTCATAGCTCTAGCTGCATTTGTAGCAGAGGATGGCATAGTT
GGTTATCAATGGGAGACGAGGCCCTTGGTCCTGTGAATGGTTATATGCCC
CAGTATAGGAGACTGCCAAGGTCAGGAAGTGGGAGTGGATGGGTTGTTTG
ACCCCCATTTTCTCCTTTCATTTTTTCTCTTCTACTCTCTTCGTCTTTGC
TTCTTTCCTTCCTCATAATCCCTTTTTTCTTTCCTTTCTTTTTCTCTCTC
TTCCTTTCTCGCGCTCTCCGCTACCTTTCATTTTATCTCCTTTTTTTCTT
CGCCTTTCCCCTTTCTTGCTTTCTTTGCATTGTCTACTTTTTTTATTATA
TATTTTCTTTTATTCTCCTCCTCTTCCTCTCATTTACCCTTACTCATTCT
TTATATACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_d18.b1 MSMg01no355_d18.b1 CHROMAT_FILE:
MSMg01no355_d18.b1 PHD_FILE: MSMg01no355_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:37 2005
         (539 letters)



>mm_chr14_19172694_19173632
          Length = 939

 Score =  586 bits (303), Expect = e-171
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcaatgatgagaattgatgagaggtaccgtacagtaggatgcatgcctttcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcagcaatgatgagaattgatgagaggtaccgtacagtaggatgcatgcctttcca 248

                                                                       
Query: 65  tagatacccaggagacataaggctgagtcatatcactctgcttcacactgctttctgtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tagatacccaggagacataaggctgagtcatatcactctgcttcacactgctttctgtag 188

                                                                       
Query: 125 tggccgcacaagctttcactcccacagaataaggttcctccaccctcagcatcatggatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tggccgcacaagctttcactcccacagaataaggttcctccaccctcagcatcatggatg 128

                                                                       
Query: 185 tcctttcttgccttaaccattgctgattttgtggggtaaggtgagagttctgtgtagttt 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 127 tcctttcttgccttaaccattggtgattttgtggggtaaggtgagagttctgtgtagttt 68

                                                                       
Query: 245 taattttcattgctctgtggctaaggatttagactactctttaaaatatttctcagtgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  taattttcattgctctgtggctaaggatttagactactctttaaaatatttctcagtgtt 8

                  
Query: 305 tcacatt 311
           |||||||
Sbjct: 7   tcacatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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